DreINT0073861 @ danRer10
Intron Retention
Gene
ENSDARG00000036295 | golga7ba
Description
golgin A7 family, member Ba [Source:ZFIN;Acc:ZDB-GENE-050417-14]
Coordinates
chr1:54249751-54254262:+
Coord C1 exon
chr1:54249751-54249852
Coord A exon
chr1:54249853-54251337
Coord C2 exon
chr1:54251338-54254262
Length
1485 bp
Sequences
Splice sites
5' ss Seq
GTCGTATCC
5' ss Score
-5.45
3' ss Seq
CCTTAACCCGAGTGTGTTAGATT
3' ss Score
-2.78
Exon sequences
Seq C1 exon
GTGCTGAAGAAGATCTCGCGCTACATTCAGGAGCAGAATGAGAAAGTTTACGCTCCTCGAGGTCTCCTCATCACAGACCCGATAGAGAGAGGCATGAGGGTC
Seq A exon
GTATCCTACCATATAACAAAAAATATATTCATTTATTCCGTTTTTAATTATGATACTCTCAAAATTATCAATAATTTTACATAAATCTGCAGATTTTTTACAAAGTTCTTTACAGAAATAGCAGAAAATGTCTGCACATTCTTTATTGCCCTATGTGTTATCAATAATATGTATGAAAAGCAGTGTTGGGTGATTAATTATTTAATTTATTCATTCATTTTCTTGTCGGCTTAGTCCCTTTATTAATCTGGGGTCGCCACAGCGGAATGAACCGCCAACTTATCCAGCAAGTTTTTATGCAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAATAATTATTAAATTGTTTAAATAAATAAATAAAGTCTCTAATTACATAATTAAAATTGTATTCAAATTGCTTTACTAATAGTAGCCTAATTACTCAATGAGTAATTTAATTAATTATCTCAAAAATGCTTTAAATAATCCATATAAATTTCAATGCACAGGCAATAGAAGTTTAACTCTTCTAATCAGGACAGTGTAGTTTTACTTAAAAAAAATAGATTAACACTATTTATCAAACACAAAATGTTTCAAATTAATGATCCCATATTTCATAAACATTTATTAACACATTTCTAATTTTTTCATTGGAAAATTGTGATATTATGTGAATTTATACCTGTAATTTGCATGAACTAGAGTCATTTTGAAGCATGTCCACTAGTCTTTGATTAATGAAACCTTTTTAAGCTAAAAAAAAATTTAATTCTGCAAAATATATTTGTATACAAAAACTCTGCTTCTCTGAATTGATTTGTTAAATTGATTTGTGGTATTTAAAACAAGTACATTAAAAGTGGCTGTATTTAAATGACAAGAAAATGAACAGTAATGCCTTACTTCAGTTATTCAGCAGAGAAGCTATATCATTACCAGGTCCAGACGAAATCTGCGGACGTTTTTTGCGATTTCTGCAGAGAATTTTGGTAAAAATCTGCCGATTTCTGCGGAATTATTTTGAGAGTATCCAGCAGAGTATCATAACTAAAACCTTAATACATGAAAAAAAAAGTAATACCTTTATAACGATTGTTTAATGTTTCAAATGCAAATACAAATAGATTCACTTAATTTGGTAAACAAAGCAAGTCTCTTATATAATATCTTTACTAAAAGACAGAACATATTACTTAACAAACTGTGTTGTACATGAATCAGATGAACATTTTCATAATAGTCAATAATATCGCTGTAATTAAGTAAAAAACTGAATACATTTAGATTTACACACATTTACTCCAGTAAATAAACAGAATTAATGATGGGCTAAAAATCTGCAGAAGTCTGTGCGCACATATTGCATGTGGGCACACTCATTACCCCCAACACTGAGAAAATATTCCAGTATGAGCATGTGAAGTCGACTAGTTGCATGTTAGATTTTGTAATGTCACATATATTTGTGTTATTCCCTTAACCCGAGTGTGTTAG
Seq C2 exon
ATTGAGATCAGTGTGTACGAGGATCGCGGATCCAGTGGTTCCAGCTCAGGAAGCAGTACAACCAGCAGCAGCGGACGATGATTTATACACCATAACATACACACACACTCACTCATTCACTCACGTGTGACGCCTTCATACTGACATTTGCTGAACACACACAGACACACACACGCTGAGCATTCAGCATCGCCAAACAGCCACACACCTGACATGACCTGCCTCCACAAGACACATGTGCTGACTCGTCATTACCTCAGTCACCCTTCAGCACCTTCACAAACCTGCAGTCGTTGCACATTCTCGAGTCGCTAGCTGTGGAAGCGTGTTTCTGCTACTGAGTAATGCAAATTAAAAACGGTAAATTAGGAGGAATGGCAGGATCTAAACTCAGAATTCCAAGCAAAAGTCAGAATTCTCAGATATAAACTCACAAGTTTAAGAAAAAGTCCAAATTTGAAAATTTAAACTCAGAATTTCAAGAACACTCAGTCAGATTTCTGAGATGTAAACTCTGAATTCCAAGGAAAAAGTCATAATTACAATAAAACTCAGTCAGATTTCTGGGATGTAAACAGTGATTGTTCTAGAAAAAGGTCAACATTTTAATAAGTAAACTCAGAATTTGAAGAAAAATCTGTCAGAATTCTGAGATTTAACATCAGAATTTCAAGAAAAAGTCAGAATTCTGACATTTAAACAAAGAAATCCAAGAAAAAGGTCTGAAATCCAAGAAAAAGGTCTTAAATCCAAGACATTAACTCTACAAACTCTGATTTGTAAATAAATGGGTTGGGTTCAACCTAAACTAAAATAACTTATGAAGTCAGAATTTACCCCCAAATTTAAAATTATGAGACAAAAACTGTGAGATGTAAATTTGCACTTTCCAACACAAAAAGTCAGATTTCCAAGATGTAAACTCAAAAATCCCAGAAAAATCTGTCAGATTTCCAGGATGTAGACTCAAATTCCTAGAACAAAAATATCAGAATTCCAAGAAAGTCTGATTTCAGAGATTTAAACTGAGAAATCCAGGAAAAGGCAAAAAAAGTGAAAGAAAAAAAAGTCCAGAGGGAAAAAAGTCCAGTGTGTGTAGACTTAGAATTCTTTTAGAAGTTAGAATGGCAAAATTTTATTTGATACAAACTGATTTGTAAATGAATGTGTTTTTTTCAACCTGAATGACGGTAAAATATGCTGGCAATTAAAGTCGGAATGTCTCTGAAAATTTGGAATTCTTACAAAAAGAATGTAAACTAACACATTTCCAACAAAAATTTCCGAGATGTGAATCTAGAATTCCAAGAAAAAGTCAGAATTTCAAGAAAGTCTGATTTTGATATTTATACTAAAAATGGAAGAAAAAAAAAAATCAAAACTCCAACATGTAAACTTAAAATTCCAGGAAAAATAAATTCTGAGATGTAAACTCAGAATTCCAAGAAAATGTCTGGATTCTGAGATTTAAATTAAGAATTCACAGAAAAAAAGTCAGAAGAATTTATAGTCAGAGTCCTGAGGAAAAAGTCCTGTGTGTGTAAACTTTCTGTGTTAGACTTCTTTTAAACGTTAGAATAGTGGAATATACATTCACAATTCAAGGGTTACTTCAATGCAAATTTGGGTAAAATATGAACAAAGCCAACCGCTGCAAAGTAAAGTCAGAATTTCCCCTCAAAATTGGAATTAAAAGACGCAAACTCAGAATTTCTACAAAATGTCAGAACTGTCAGATGTAAAACTTGCACATTTCCAATGAAAAAAGTCTGAGATGTAAATTTAGAATTCCAAGAAAAATCTGTCAGATTTCCAAAATTTAAACTCTAATTCCAAGGAAAAAGTGAGAATTCCTAGATGTGGTCAAAATTCCAGTAAACAAGGCAGAATACTAAGATGTAAACTCAGAATTGCAAGAAAGAAAATCTAAATTCCAATATGTAAATGCAGAATTCCCTCGAAAAAGTCTGATTTCTGAGATATAAACTTAAATTCCAGGAAAATAATTCCTGAATCTGAGATGTAAAGTTAAAGACCTGAGGAAAAAGTCCCGTCTGTGAGATCTAAACTTGAAATTCCAAGAATAAACTTTAAGTTCTAAAAAAAGAAAGAAATCTGAATATCTAAAAGATCGTATTTCTGAGATTTAAACAAAGAAATCCAAGAAAAAGATCAGAAGTTCAGGATATAAACTAAGAATTTTAAGATGTAAACTGAAAAAAATCCAGAAAAAAAGACCCATTTACAAGATGTAAAGTCAGATTTTTGAAGTAAAAAAAAGTCAAGGCTGTGAAAAAAAAGAAGTCCAAGATTTACTCCTAAAGTCTAAGAAAGGTATCACGCATTTCTGTTCCTCACAGCAGAAACAATCTTCCTTTCTATCTGTAGCATACTGGTTAAAGCGCACATACGCTTCTGTCACTGTAATATGCAATCTCGCTCACAAACGCTGTGTGATGTAGCTGCCGATCGGCACACAACAGTCTTCCATCCTCATCGTTTTTTACCCCTTTTGTGTTTGAGTATTTGGAGTTGAGCACTTTTACTCTTAACTATCGAAAAAAGAGTCCAATTTGTAGACTAGAATCTGTAGATGTTCATGATGAGGACAGATGCGGAGATCTGACCCCAGACACTGCCATATTAAATCACGGGTACTATTTGTGACTTTATTTACGATTTATGTTTTATTTCATAGTGTGCTAAACATTCATGCTTTGTACTCATAATGCGCCGTCAAAGCGGAAACGAGTGCTGATGACGTGAACTGCCAAGGGCCAGAGCTTCCTCACACGATCCTTCGTCATGAGCTTCCATTTTCTTACTGAGAACCTTTGGCCCCAAGAATTTATGCAAAGAGAAAAAGAAGTTGAAAGTGCTTTTTCTGTTTGTGTAGCAAAATAAATGAGAAAAATGATTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036295:ENSDART00000089603:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.577
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTCATCACAGACCCGA
R:
CGACTCGAGAATGTGCAACGA
Band lengths:
352-1837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]