GgaINT1014055 @ galGal4
Intron Retention
Gene
ENSGALG00000026745 | GOLGA7B
Description
golgin A7 family, member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr6:21831332-21831641:-
Coord C1 exon
chr6:21831547-21831641
Coord A exon
chr6:21831447-21831546
Coord C2 exon
chr6:21831332-21831446
Length
100 bp
Sequences
Splice sites
5' ss Seq
CATGAGAGT
5' ss Score
-0.36
3' ss Seq
CCACGGCTGCTCCTTAGCAGTAC
3' ss Score
2.12
Exon sequences
Seq C1 exon
GTCCTGAAGAAGATCTCCAAGTACATCCAGGAGCAGAATGAGAAGGTCTATGCACCACGGGGGCTGCTGCTCACCGACCCTCTGGAGCGTGGCAT
Seq A exon
GAGAGTTGTATCCTCTGGGATAAGGGGGATGAGGGTGGGCGGACACCGGCAGCGGGCAGGGGGGCTGTGGCTGATGCATCCCACGGCTGCTCCTTAGCAG
Seq C2 exon
TACCCAGATCGAGATCTCCATCTATGAGGACCGGTGCAGCAGCGGCAGCTCCAGCAGCGGCAGCTCCAGCAGCAGCAGCAGCGGTGGGGGGGGCGGTGACTGGCAGGGGGGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026745:ENSGALT00000044797:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(27.0=100)
A:
NA
C2:
PF102564=Erf4=PD(4.3=12.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGAAGAAGATCTCCAAGT
R:
CTGCTGCTGCTGCTGGAG
Band lengths:
176-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]