HsaINT1014649 @ hg38
Intron Retention
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97864168-97871578:+
Coord C1 exon
chr10:97864168-97864269
Coord A exon
chr10:97864270-97865589
Coord C2 exon
chr10:97865590-97871578
Length
1320 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCC
5' ss Score
-4.57
3' ss Seq
TCCTTAACCACCGACCCCAGATT
3' ss Score
3.78
Exon sequences
Seq C1 exon
GTTCTCAAGAAGATTTCCCGCTACATCCAGGAGCAGAATGAGAAGATCTTTGCACCTCGAGGCCTCCTACTTACAGACCCTGTGGAGCGTGGGATGAGGGTT
Seq A exon
GTATCCTTCTGGGCTATTCTGTGTTGAGGGCACAGGACTGCTAACCAGTAGAGATCCTGGTGAGGCTGCCAGGAAACGAGGCCACCTTAGGGGCCTCCACTCAGGTTTTCCCAGGATTCCCCACATCAGTGGTCCTCAGCCCTCCTCCACCACCCTAAGTTATTGGAGGCTTTGTGAGTTTCAGGATTTGCACTTGTTGGGCTGCATGTAATCAGTGCTTAGAATATGCCAGCTATCATGTGAAGTGCTTTGAAAATACGAATTCATGTACTTCTCATAACAATCTTACCAGGTGGGTTGCTCTGATTATTCCCAGCAACCTGCTTAGAGTCGTGCAGCTGGTGAATGTGGGAGCCAGGAATTGCACCCAGGCTCACCCTTAACTACAAAGACCCCTCCAGGAATATGCAAATCACCACATTCATTTACAGGTCCACAGTCTCATGCAATCCTCATGGAATCTCCCGTGGCAGGTCGCATTGTCCTCCTTTCACAGATGAGAGACATGAGGTCTAGAATGATGTGACTACCCCAAGGTCTCAGTCCTGGTGAGAGGCTGGACGGGGGTGGGGCGTGGTTCTGCTGACTTTATCTCCACTTGGAATAGTGTGATCTGGGTGTGCACAAATCCCTCCCCCCGGGCAGCAGCAACACGAGTAGAATTGCTAAAAAATAAGGTTTACTGGAAAACTGAGGAGAAACAGAGTCAAAAAACCACAAACACCCAGAATCACGTGTTGACAAAGCCCAGTGAGAGGCACTTGTTTTTATTGAGCCTTTACTATGTGCCAGGTTTTGTGCCAAGTGTCTTACATACATTTAATCTAATCTCCACACTAACCCCAAGATTCTATTCTTAATCCCCATTTTGCAGATGCGATAATGGATGGCTAACAAGTTAAGTGACTGGTGTAAGGTCACATAGCTTTGTGAGTTCCTGAATCAGGATTTGAACTCAGGACACTAAAGTCCTCATACTTCCTGTGCAGTGACACCACCTCCCTGGGCACATCTGTGTCCTAAGATATGGTCATTAGACCCACTGGAATGTAAGCGCCATCAGGGCAGCGACCCTGTCTGCTGTGATCACAGCTATGTGCCCAGCACAGGGCCTGGCCTTACGAGTCTCCCTAATTGTTAGCTAAGTAATGTGCATGGATGGGCTTGGGGAGGGTCTAGCTCCCAGGCCTTTACATCCCTACTGTCTAGGCAGCAGCACAAGCCCACTTTCCCACTCCCCTGCTGGACTCCATCCGCTGGTTCATGTCCCACCCCTGCTCAGCAGCTGGGCTCGCAGCTCTCCTTAACCACCGACCCCAG
Seq C2 exon
ATTGAGATCTCCATCTACGAGGACCGGTGCAGCAGTGGCAGCTCCAGCAGCGGCAGCAGCAGCGGCAGTGGCAGCAGCAGCGGTGGGGGTGGTGGGGCGGGGGCCCGGTGACTGGCCGAGAGTCCCTGTAGGGAGGTGTATGGCCGGAGTGAGGGCCTTGCAGACCTGCGGCGGCTGCGCTACCAGAGCACCCGCTTCTGAGTCATTCTTTGGGCTCACCCTGCTGCCCGGGGTGGGAGGGAGGGTGACGGGCCTCATATTTCCTGTGGGCCATCAACCTATGCCCCCTGTCCCTCACCCCCGTCTGGATCAGTCCATTTCCTGACCTGGGGGCTTTTCCTTCCCGATGGGGCTGGTCTGGGCCACACAGAGACAGATCTTCCTAGGAAGGCTGGGGTGGGGAGAACACAACCTAGGCGGCCCCTCTCTTCCACAGCCCCTCTCCCAACCCTGCGAGGGGGGCCGAGGCCTGCCACATAGAGGACTCCCACACTGCATGACCCCTCATCCCAAACCCATATCCACCAGGACTCTTTCCCTTGGGCCCTGCGTCCCGTGGCTGTCTCCCAGTATCTGTTCCTTCTCATGCCCCTGCAGGGCCCCGGCCTGTCTATGATCCTGCCTCCACCAAATTCAAGGTGTGGGGAGACGGGTGCCGTGGTTGGGAGCTGTTCAGCGCACTCCTGACCTCTTCTAGACCTATGGCTTTCCTGTCCTGCATTCAGAGCTAGAGGCCAGCTCGGCCTTGCGAGAAGCATCCAACTTTGAGACTTTGCAGGCTGCCAGGTGCTGGTTGGGGGGCACAGAGCCTGGGGCTCTGGGAGGTAATATGGGGGTCTGGGAAACTCCGTGAAGAGACATAGCCATGCGGGGCCTGAATCTCCTGAACTACAGCCAGTTTCCTGAGATTAGAACCTGTGTGTATGCACATGTGAATGTATGTGTGAGTGCACATGTGTGTAAGTGCAGTGTGCGTAAATGTGTGAGTCTGCGTGTGTTAGCATGCCTGTATGTGAGCGCGTGTGTGAGCGCATGTGTGTGCACCAGTGCACAAGTGTATGAATGTGGACACATTTATAAGCACACCTGTGTGTGTCTGAGTACATGTGCACACACGTGTGCACAAATGTGCATTTATATGAGTGTGAGTGCATGCATGTGCATGAACATGTGTGCACAAGCATGTGTGTATGAGTGTTCATGTGTATGAGTGTGTGTGTATGCAGGTGAGTGCATGTGTGTGTGAGTGTGTTTGTGTGTTCCCCTTGGCTGCCAGGCCAACGACTGCTTCTCTGCATCCTGCTGTCTTCGCTACCTGAGGGTCTGTGACTTCTTCCCTGTGTGGGTCCAGCCTGACCCCCTGTAAGTAAATGTCCAAAAGCCCCTTGCCCCTCCCCTAGGGCTACCAGGGAACATACTCTACTGCATATGTTCTAGTGGAAGAGAAGCCGGGGTTCTAGGAAAGAAGAGCCAAACTTTGGTGGCCTTTGGTGCCCCCTCTCAGCTCCCCATGACAAGACAACGGGGCTGCAGACACTGTGTGTTCAGCCTGCCCAGGGGCTGGGGCTCTTTAAGGCTTTGTAGGTGAGGTTTCCATGGACCTTCAAAGGTGCCAGCAGCCTGCAGGGGAAAGGCAAACTCCCTCCTTGCAAGGAAAGGAGATGTCCAGCCAATGATGCCCGGCTTCTGAGGCCCAGAGGAGCAGGTGGGATGGGAGCAGCCCCTGGGGCTGGTGTCCCGAAGATGAAATGAAGGGGGCTGCCTATCTCAGTTGGCGGGAGGTGTTAGAAGTGGATGTGCAAGACCAGCCACTGGAGGTAGCTCTCTGGAGTCAAAGAGAGGCCTGCTTTTCTACCAGACATGGGAGCAGCATGTAGGATACAAGGGCCTACCCAGAGACCAGAGAGAGTCAGCCTAGTCCTTGCAGCCTCAGGAAGTCCTCGGCCCAAGTGAGTCCTGGTCCAAGGATCCCCCTGGAGAGCCGCAGTTCAGTGGGCTCCACCGCAGCCCCTGGCCACGGCCTATGCCCTCCCTGGGCCCCTGTGGGGCTGGGCATTGTGTCTGACCTGTGCATCTCCCATGGGAGGGCTGGGCACAGGCAGTGCTATGGCCTTTTTTTTTTTTTTCTTTTTCCAATAAAAGAACTTGCCCAGCGTGAAGCTCTGTGATGCTTTCTCTGCCCCGTGACGATGGAGGGTCAGTTCTATGCTCCAGGACCACATGAGGGGATACTCAGCTGCCTGAACTGGACCTGACATGGGGAGCAGGATGAACTCTGTCTTCTTGGAGCTTGCAGTCTACTGAAGAGGCAGACACCTCAGCATCTCTAATCTGGAATCTTTGGGGCACTTGTAGCCTTGGGTGGGGGAACAGGTTGGACTGAAAGCGAGGCCAAAAGTAATCAATTAATGATATCAATAAATCCTCATTTCTTGAGCTCTTCCCCTGGGTTGGGTCCTGTTGGGAGCTGGATCACACAGGTCACTCAGTACTGAAGATGAGAAAGTAGCTGGATGATCACTTCTCGGCCTTTTGGCCAAGATCAAATATGGAGAAAGTAGCTGGATGTTGGAACCTAGCAGAGTTGTGTCTTGAATTTTATAATTTATTGAGCACCTACTATGTGCCAGATACTTTGCTGAAACCATATGTTAGAGCTGGCAGGGGATTTAAAGATCACTTGAATCCTGTCACAGAGGTCCAGAGAGGGTGGGTGACTTGCCCTAGGCCACACAGCTGGTTGATGATAACAGGGCCCAAGCTTGGAACCCAGGTCTCCTGACTCAGTGCCCACTCTGTTACCACAGGGATGGCACCCAGATGGGAAGCTGCCTGAGGCTGCAGGGAGGCTGGGATCACAAACTCAGGCCTGTTCCCAGAGAGGGGCTCATCAGACTGTGGGGACAACGGCTCCAGCCTCTTAGGTGGGGGCTGGGCAGTCCCCTCTGGGTGGTTCTCATGTTTGTTGTCACTGCCGCTAAGGGCTGCAGTGAGCTGTGTGCAGCCTGGACTCACTCCCTCTGCTGGAACCTGGGCCGTGTGTGGGTTGCCACAAGTGAGCGTGTTCTCTAATATGAGGGCAGGTTCATTCTGTTTTGGGATAGGAAGTTTGTTCTACCCCGAGGCCAGATTTGAATCCAAACTCAGCTCTTCTAGAGATGAGGTCCTGGGGAGGGGGTGAGGATTTACTAAACGGGTAAAACCAAATCTGGGTGCTTATCTGACTGAGAGGCATTCAACCCTTCCATTTTCAAATGGTAATCATAATAATAATAGTAGCTGACGTTTATTTAGCACTTCCTATGTGCCAGGCACTAGGCTAAGACTCTACATAATTAGTCATTCAATTCTCACAGCAACCCTCTATGGCATGGATTCTTATTTCCCATTTTACATATGGGGAAACTGAGGCTCATGGACGTTAAGTAACTGGGAAATTGCAGATCTTGGCTTTGAATCTAGGCAATCTGACTCCAAACTGCAAGGAAGAAGACAGATCCAGCCTCAGAGGCCGCTTAACAGCTTGAGGGCCTCAGCCGTCCTGGGATTAGGATCAGGCAGATTCCCAGGGAAGGACTTGGAGCCATGCCTGGGTTTTGAGGCCGGGCTGGCACCTCCACTTCCAGGGCATCACGGGAGGGTGCATGGGCTGTGCTCGCAGGCATGCGGGACCCAGAGGCAGCCCGGTGAAGGGTAGTGGGGGACTCGACTCACTGTGGGCCTGGGGAGGTGTGGTTTCTCTCTGCTGGCTTAGTTACAGGTGGTGGCCTGTCTCTCCGGGGTCTGGCTGTAGCCATGTCCCTGCACCCACCTTGCCAGCCAGGGACAGGCCCCATCAAGACCCAGGAGCAGCTCCAGCCTCAGCCAGACTGTCCCCGAGGTCCCAAGTGAGGCCCCAGCCACTCAGGCATGCCTCAGGAAGCTCCTGCTGCACATGCTCCTCTCCCTGCGCCAGCACCCTGCTGTCTGGCTTCCTTCCTTTGGCCACAGGGCGGGTGTGTGTGAAACCACAGGGTTTACAGAAGCTCGAGGTGCCACTGAGTGGCAGGATTATGCACTGCACTCGGGGAATCAAAGGTGGAGACAGAAAGAACTATGGCTGTTGTGACACGTCCCCCACGGCTCCCCGGTTGGCAGCCACTGCCACCCGCAGGGACTTTTCTGTGGCTTCCAGAGGTGTGGGGCAAAGGTGGAGTCTGGTGACTTTCTCCCTAGGGCCAGCCCCTGGGCTGTCGAGCCTGGGAAACTCCACATCCCTCTCCACACCTCTAGAAGGACTCACAATGAGGGGGGCCCAGACAGGAGGCATCACCACCTGGTTTGGGCTTTACCATTCACCCAGGGATAAGGCAAGGCAAACACCACTCCACATCAGATCTGAATTTGAGCTCTGGCTTCATGACACTGACACATGAAGACTCTTGGAGCCTCAGATTCCCCAGTTGTTAAATAGGGAGACTAATATCTCACAGAGTTGTTTAGACCCGAGGCGTTCAACCTTGGTGGCAATGGATGTCAACTGGAAGCATGAAAAATCACCAATGCCTGATCCTATCCTCAGAGATTCTGATTTAATTGTTTTGGGGGACAGCTTGGGCATCAGGATTTTAAAGAGTTTCCCTGGTGATTTTAATGTGAAGGTAAGGCTGAGAATCCCTGGTTTTGACAGTACCTATAGCCTATAAGCCTTTAATACACCTCTGAAAATGCCTGAGACCTGAATAAGAAGTTTATGGTTCCACAGAAGCAGCCAGACACAAAAATGCATATGCACCATGTGATTCCCCTTATATGAAACTGAAAGACAGGCCAAACTCGCCTTTGATTGGGAGTCAGGATCAAGATTACCCTGGGTCGGGGGTAGCGAATGGATGGGGACCTGGGGGGCTTCTGGGAGCTCAGGATGTTCTGTTTCTTGATCAGAGTGCCAGTTACACGGGGTGCTCACTTCATGAGAATTCACTGAGCTGTATACTTAAGAGCTGTGTATTTGTCTGTACTGGTGATATATTTCAATAAAATTCACCAGAAAAGCCTGTTGGCTACAAAATAGGAAAAGAAAGGACACACTTGAAATTAACGTTTTGTTAAATATCTGGAAATGTAACACATATGCCAAACAGACAACTGCAACTCTATGTTACGTGTGTGTGTGTGTGTGTGTGTGAAAATGTAATGTCTGCTCTGCTGTGGGTGGGCCCTCTAAAAGGGAAGGTCCCTGATGCCTAAGAAAATCTGAAAACAGCCCAGGTTCACACCAGGAGTTCTTAACCTCGACCCGACTGCATTCAGGTGCATATTATGTGCCGTTATCTGAGGAGAGCATCTACAGCTTTCAGCAGATTCTCAAAGGGGTATGCAACCCCCTAAAAAGGTTAAGAACAATTGGTTTTGAGGAGTCAGTAAGAAACTGGCCATGAATGTGCTTGGCATGAAAGAGATGCTTGGTAATGTCGGTTTCTTTCCTTCCTTTCAGAGCCCAGCCTTCGGAGGTTTCCGCATGAGCCTTCTCGGGCGACTTCTAGGAGGATTTATTCCCCTGGCAGTGCCAAGGGCAGCCTGCACCAAGCTCACAACTCTTCCTCCAAGAGGATGTTCAAAGGGCCTGTCATTTCAGCATCTGCTGGACAGCAGAACTTCGCATGCAGGATCCTGGAGCTGCGTCGGGTTTTGAATCAGGGACAATGGAGGAAGTGGGAAACTGTGAAGAGAGTCAGAGGGCTGTGCCAGCTGCCCCCTTTCCCACCCCCAGCAATTCACTTAACTTTCCTGAGTCTCACCTTTGTCATTATGAGAATGTGTATATTTATAAATAATCATCTGTTTCTCCAATGTAAGATATTGTTATTGCAGAAGTGATACTAGGACCTCGTTATACGATGGCCTCATGATGTAGATTTATAGCAGGCTTCAGATTCTGGCATAGAATAAACAGATATTTATCCAAGGGTTCACTGATTCCCGAATAAATGCCAGGAACATTCATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265:ENST00000370602:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCTTTGCACCTCGAGGC
R:
ATAGGTTGATGGCCCACAGGA
Band lengths:
342-1662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains