RnoINT0066339 @ rn6
Intron Retention
Gene
ENSRNOG00000015051 | Golga7b
Description
golgin A7 family, member B [Source:RGD Symbol;Acc:1583839]
Coordinates
chr1:261512961-261516892:+
Coord C1 exon
chr1:261512961-261513062
Coord A exon
chr1:261513063-261514205
Coord C2 exon
chr1:261514206-261516892
Length
1143 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCC
5' ss Score
-4.57
3' ss Seq
CTCCTTAACTAGCGTCCCAGATC
3' ss Score
-0.24
Exon sequences
Seq C1 exon
GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCCGTGGAACGCGGAATGAGGGTT
Seq A exon
GTATCCTTTCGGGCGCGTCTATGTGAGGCGCAGAGTTGTCTACCCAGCAGGCTCCTTGAGGATGTGGCTGGGAAGTGGGAGGCTCCCTAGAGGCCTTCCGGAATCCCGCACACCACTGTCCGTGGGCGCCCTTCACCTTAGTTATTGGGGTCATTTGTGAGTTTCAGGTTTTGTTTTTATTGAACGTCATGCCATCGGTGCTTAAAACAGGCCAGACACCACGCAAAGGCTTTGAAAAATACCATCTCACGTGATTTCCATCCCAATCCCAAGAGGTGGGCCCTTCCTCCCTCTTGTGTACCAGGACGCTGAAGGGAAGCTGGCTCAATCACTCACCTTCAAGCAGCAGATTGTCACCGTCAGGATTTGAGCCCAGGCTCTCTCAACCTGTTTGGTTCTCAAAGAGTCTGTAAACCTTCCACAATCTCCTTTAATAGCCCGTGTAGAGCCCCACTATCCACTGAGTGAGCAAAACGAGCTGCAGAAGTGGGGTGCTCTGTGGGTTGACTGTTTTGGTGACAGGCTGGGCAGGGGGTGGACAGGAGTTCTGCTGACCTCACTTGGAACAGTAGTTCAGGTGTTTAACCACTGCTCCCCATTCAGTAGTTAAAATAATATTATTTTACAATAAAGCTGAGAGAAGAGTTCAGAAAACGTAAGTCCCAGACAGCACACACATTCCCCCCTCCCCGATTCTTTTTTTACTGAGCCCTTGTGTTGTGCTGGGTACTCAGTTCAATTTTCACAGGAACCCCAAGGCTCTGCTGGTGTCCCCAGTTTGCAGAAGTGATAATAGACGGTTAGCAGGTGAAAGGATTGGACTAACTGAAGTGGGGCCATTAGGGATGGGCCACTTCAGCAAAGGGAAGTGTTTGTATCTAACACCATTTCCGGGTGCCTCTGTGACTTGGGATTCCATAATGCATCTCGAAGAAAGCCAGAATTTGTCTGTGGGATCCCATTGTGCGCTCAGCCTTGTGTCCTCTCAGAAACTGTTAGCTGAGGCTTGGAGAAGGATTTTGACTTCAGTCAAGCCTCGGTCTTTGGGCATAGCGGGCTTCAGGTCACGGGTCTCATTCTGGATCTGTACCCCGTTTCCTGAATAGCAGCCGGGTGCTCGCAGCTCCTTAACTAGCGTCCCAG
Seq C2 exon
ATCGAGATCTCCATCTATGAGGATCGGTGCAGCAGTGGTAGCTCCAGCAGCGGCAGCAGCAGCGGCAGCGGCAGCAGCAGCGCTGGCGGGGGAGGGGCGGGGGCCCGGTGACTGGCCGAGAGTCCCTGCAGGGAGGTGTACGGCCGGAGCGAGGGGCTGGCAGATCTGCGGAGGCTGCGCTACCAGAGCACCCGCTTCTGAGTCTTTCTCTGGGCCCACCCTGCGGTGAAGGGAGGGTGACTGCCCGCTGTTCCGTGTCCCCAGCCCTTTGTCCCTTGGCAGGATCTTCTTTCTGACCCCGGACCTTTTTTTTTTTTCTCTCCCATGAGGCTGATCTGGGTCATTAGAGCCAGACCTTCCTAGGGTGTCTGGGGTGGGGGTGGGGGACCCAGCTTGGACAAACCCTCTTTCCTGCCTCCTTCCTCACTCTCAGGAGGGTCTGGAGAATTCACACCCTGCATGAGTCTTCACCCTCAAAGCCTACCTGGACTGTGCTCCCTGGGGCTCTTTCTAAGGCCCAACGATACCATGGGCTCCTGCTTGTCAATGGTCCCATCTCCTCATTGGAGATTTGGGGAGACAGGTGTCCTGGGAGCTATTCAGCCGCTCCAAAGGCAGTGGCTTTCCTGTCCTTCCCTCAGGGCCGAAAGTTCCCTCAGCCTTGCCAAGAAGCACCCAATTCTGAGACTTTGCACCCCACCAGGAACTGCTTATAGGGGTTCAGCCTAGGACTCTGATGGGGTCCACTGGGGTATGGTAAAACTCTTTGGATGAATGAGCTGGACAGAGCTTGAACTCCTGAACTGGAGCCAATTCCTGATCGTGTGCATACATGTGGAGTGCGCTGTGTGCACAAATGTATGTATGTACGTATGTATGTTTATGGGTGGGTAAGCATGTACATATGTGAGCATACATGTGTATGAATGTGAGTACCTGTACAGGTGTATGTGTGCATGTGCACACGTGTATGAACCTATGTTTATCTGAGTGAATGAGGGAGAATGTTAGGTGCATGTGTACAACACATGCATGCAAACTATGTATGCTTACGCACAAGTGCACTGTGTGAATATGCATGTCTATGTGTAAGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAAAAGAGAGAGATTCCATTGTGTGTTCTCTTTGGCTGCTGGGCTAATGACTACCAAGTCCTGCCCTGTCCTGTCCCACACTGGTCTGTAGAGCCTCCCTGTGAGTCCCTCCTGACTGACCCTCTCTGTAAATCAATGTCCTAAAGCTGGGCTGTCAGCTTGGCTCTTCCTCCTGGCCTTTCTCCCACCTCTGGCTCTACTGTACACATTTTAATGGAGGAACAGTTGAGGTCCTAGGAGAACAGAGCCAACATTTAGGTGGTCTTTGGTGCCCCTCTTCCAGCCCCCATGGCACAGTGGGGCCACAGATGCTGCATATTTAGCCTGCCCAGGTGTCAGGACCCTGAAGCCCTTGCAGATGAGGCTTCCCTGGACATTCAAGGCAAATGTGCCTTGCAAGGAAAAGCTAATGGTGCTGTGGCTCTCGAGGGGAGCCAGTAGAAGGGCAGGCATCCTGGGGCCTGAAGATGGACAGAAAGGGGCTGCCTACCTCAGCGGGCAGGAGGTGCTAGAACTAGACAGGAAACACCAGCCACCATAAGCAGCTTTCTGGAGCGGAAAGGGCCTGTTTCTCTAGAGGCCAACGTCTGCACATGTGACAGCAGGAGACCATGCTGAGAGATAGAGAGGGCCGGCCAAGCCCCTGAAGCCTCAGGGAGCCTGAGCCCTTTGAGCCCTGGTGCCATGAATCCCTTCTTTCCGAGCTGCAGCCCCCGATTCCTTGCAGAAGCCTGTGCCCTCTGTAGCCTGCTGTGTGGCCAGGCATCGTGTCTGACTTTGCACAGCCTGTTGGGGAAGGTTGGGAAGAGGCAAGATGAAGACCTTTTGTTTTATTCTTTTCCCAATAAAAGGACTTGCCAGCTTGAGGCTCCATGCTGTTTCCACTAGTCCATCCAAGGAGACACTGGGTGTGCGTGTGAGGAAGAAGCAAACTGCACACAGGACTGATAAACTGTCTCCTTGGAGCGTACGGGTCAGCGAGGAGGTGGACATTCCAGGTCTTCCTACCAACCCTTGACCTTTGGTGGGTCTGACACTTCGGGTGGAGCCAGTAGGTTCAAATAAAAGCTAACCCAAAAGTAATTTATCAGTGAGATAGGGAGGGGCTGTTTCTTGAGCTCTTACCCTAGGTCACACACTGTTTGGGGTTGAGTCACACGGGCCGTTCAGTGTTGAGGACCAGAAGGGGCTGGCTAGGTGGCTCAGCCAGTGAGATGCTCGCCGTAGAAGCCCGAAGACCTGAGTCTGAGCTCTGGAACCACGTAAGGTGGAAGAAGAGAACTGACTGCTTAAAATTGTCCTCTGATCTCCGTACACATGCATCATGGAATGGTACACCCCACCTCCACCCACTGTGAATCCATTAAAGTTTAAAAAAAATATTAGAAAGCAGGTAGATATTGGAAACTAGCATTGCCTAGGTCTTGGGTTTCACTAGATTAAGCATTTATTAACCGCCTATGATAGACCAGGCACTTTGATAAAAACATATTCTAGAGATTTAAAGATTAGCTGAGTCTTCTCAAAGACTCAGAGAGGTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015051:ENSRNOT00000020390:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGTCTTTGCTCCCCGA
R:
GATCCTGCCAAGGGACAAAGG
Band lengths:
349-1492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]