MmuINT0072245 @ mm10
Intron Retention
Gene
ENSMUSG00000042532 | Golga7b
Description
golgi autoantigen, golgin subfamily a, 7B [Source:MGI Symbol;Acc:MGI:1918396]
Coordinates
chr19:42266977-42270348:+
Coord C1 exon
chr19:42266977-42267078
Coord A exon
chr19:42267079-42268351
Coord C2 exon
chr19:42268352-42270348
Length
1273 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCC
5' ss Score
-4.57
3' ss Seq
CTCCTTAACTATCGTCCCAGATC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT
Seq A exon
GTATCCTTCCGCGCTCTTCTACACGAGGTGCAGAGTTGTCTACCCAACGGGCTCCTTGAGGATGTCGATAGGAAATGGGAGCCTCCCTAAGGGCCTTCCGGGATCCCACAACCCACTGGCTGTAGGCGTCTTTCACCGTTAGTTATTGGAGTCACATGTGAGTTTCAGGCTTGGTATTTATTGAACTGCATGCCATTGGTGCTTAAAACAGGTCAGCCACCATGCAAAGGCTTTGAAAAATACCATCTCGAGTTCGAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGAAAGCCAGGGCTATACAGAGAAACCAAAACAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAGAAAGAAAGAAAAAAAGAAAAAGAAAAATACCATATCATGTGATGTCCATCTCATTCCCAAGAGGTCGGGCCTTTCCTAGCCTCCGGTGTGTACCAGGATGTTGAAGAGAAGCTGGCTCAATCACTTACCTTCAAGCAGCAGATTGTCACAGTTAGGATTTGAGCCCAGGCTCTCTTAACCTGTAATACTTTCTGGTACTTGAAGAGTCTGCACGGCTTCCACAATCTCCTTGAATAGCCTGTGTTGAGTCCCACTCTCCACTGAATACAGAAGATCAAAATGAGCGGCAGGATGGGGTTGCTGTATGGGTTGGCTGTCTTGGTGACAGGCCGGGCAGGGGGTGGATGGGTTCTGCCGACCCCACTTGGAACAGTAGTTCAGGTGAATAGCTCCCCGTGCAGTAGTTAAAATAATATATTTTACAATAAAGCTGAGAGAAGAGTTCAGAAAACATAGTCCCCAGAAACACACATATTTCCCCCGATTCTTTTTTTCCTGAGTTCTTGTGTTGTGTTCAGTACTCAGGTACTCCATTTAATTTTCACAGGAACCTCAAGGCGCTGTTAGTGTCCCCACTTTGCAGATGTAATAATTGACTGTTAGCAGGTGAAGGGACTGGCCTGGCCTGGCCTAACTGGAGTGGGCCATTAGGGATATGGAAAGGGAAGTGTTTGTATCTAACACCATTTCCCAGTGCATCTCGAAGAAAGCCAGAATCTGTCCATGGGATCCCGTTGTGCACTCAGCCCTCTGTCCTCTCAGAAACTGTTAGCTGAGGCTTGGAGAAGGGTTTGGATTTTAGTCAGGCCTCTGGTCTTTGGGAATAGAGTGCTTCAGGTCACAGGCTCGTTCTGGGTCTGTACTCCGTTCTTTGGTTAGCAGCCGGGTGCTCGAAGCTCCTTAACTATCGTCCCAG
Seq C2 exon
ATCGAGATCTCCATCTATGAGGACCGGTGCAGCAGTGGTAGTTCCAGTAGCGGCAGCAGCAGCGGCAGCGGCAGCAGCAGCGCTGGCGGGGGAGGGGCGGGGGCCCGGTGACTGGCCGAGAGTCCCTGTAGGGAGGTGTACAGCCGGAGCGAGGGGCTGGCAGATCTACGGAGGCTGCGCTACCAGAGCACCCGCTTCTGAGTCTTTCTCTGGGCCCACCCTGCCATGTGGTGCGGAAGGGAGGGTGCCTGCCCGCTGTTCCCTGTCCCCAGACCTTTGCTCCTTGGCAGGATCTTCTTCTTTCTGACCCTGGACCTTTTTTTTTTTTTTTTTTTTTCTCCCATGAGGCTGATCTGAGTCATCAGACCCAGACCGTCCTAGGATGTCTGGGGTGGGGGTGGGGGACCCAGCTTGGACAAACCCTATCTTTCCTGCCTCCTTCCTCACTCTAAGGAGGGCCTGGAGAATTCCCACCCTGCATGATACTTCACCCTCAAAGACTCTTTCTAAGGCCCAACGCTACTATGGGCTCCTGCTTGTCAGTGGTCCCATCTCTTCACTGGAGATCTGGGGAGATGGGTGCCCTGGGAGCTATTCAGCCGCTCCAAAGGCAGTGACTTTCCTGTCCTCAGAGCCGAAAGTTCTCTCAGCCTTGCCAAGAAGCACCCAACTCTGAGACTTTGCACCCCACCAGGAACTGATTTTAGGGGTTCAGCCTAGGACTCTGATGGGCTCCACTGGGGTATGGGAAAACTTTGGACGAATGAAGCTGGACAGAGCTTGAACTCCTGAACTGGATCCAATTCCTGCATCGTGTGCATACATGTGGAGTGCACTGTGTGCGCAAATGTATGTATGTATTTGTATGGGTGGCTAAGCATGTACACATGTGAGCAAACAAGGGTATGAATATGAGTGCCTGTATATGTATGACTGCACAAGTCAATGTGTGTATGTGCACATGTGCGTGAACCTATGTTTATCTGAGTGAATGAGGGAGAAGGTAAGTGCATGTGTGCAACACGTGCATGCAAATTATGTATGCGTGTGCACAAGTGTATTGCGTGAGTATACATGTCTATGTGTAAGTATGCATGTGTTTGTGTGTGTGTGTGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCGGTTGTGTCGTTGTGTGTTCTCTTTGGCTGCTGGGCTAATGACTACTGAGTCCTGCCCCATCCTGTCTCACATTGGTCTGCAGAGCCTCTCTGTGAGTCCCTCCTGGCCCTCTGTAAGTCAATGTTCTAAAGCTGGGCTGTCAGCTTGGCTCTTCCTCTTGGCCTTTCTCCCACCTCTGGCTCTATTGTACACATTCTGATGGAGGGATTGTTGGGCTCCCAGGAGAACCAAGCCAGCGTTTAGGTGGTCTTTGGTGCCCCTCTCCCAGCCCCCATGGCACAGTGGGGCCACAGATGCTGCATATTCAGCCTGCCCAGGTGTCAGGACCCTGAGGCCCTTGTAGATGAAGCTTCCCCGGACATTCAAGGCAAATGTGCCTTGCGAGGAAAAGCGAATGGAGCCATGGCTCCCTAGGGGAGCTAAGTTGAAGGTGATGCATCCTGGGGCCTTAAGATGGACAGAAAGGGGCTGCCTACCTCAGCGGGCAGGAGGTGCTAGAACTAGACAGGAATCACCAGCCACTATCAGCAGCTTCCTGGAGCTGAAAGGGCCTGTCTCTCTACAGCAGGAGACTGTGCTGCGGATGGAGAGGGCTGGCCAAGCCCCTGACGCCTCAGGGTGCCCGAGCCCCATGAGCCCTGGTGCAATGAACCCCTTCTTTCCGAGCTGCAGCCCCCGATCCCCTGCAGAAGCCTGTGCCCTCTGTAGCCTGCTGTGCAGCCAGGCGTCCTGTCTGACTTTGCACAGCCTGTTGGGAAGGTTGGGAAGAGGCAAAATGGAGGGAGACCTTTTGTTTTATTCTGTTCCCAATAAAAGGACTTGCCAGCTTGAGGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042532:ENSMUST00000122375:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGTCTTTGCTCCCCGA
R:
CTGCCAAGGAGCAAAGGTCTG
Band lengths:
353-1626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types