HsaINT1014647 @ hg38
Intron Retention
Gene
ENSG00000147533 | GOLGA7
Description
golgin A7 [Source:HGNC Symbol;Acc:HGNC:24876]
Coordinates
chr8:41505911-41507121:+
Coord C1 exon
chr8:41505911-41506012
Coord A exon
chr8:41506013-41507053
Coord C2 exon
chr8:41507054-41507121
Length
1041 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCT
5' ss Score
-2.19
3' ss Seq
TTTTCTTAACAGCCATGCTGTTT
3' ss Score
-9.77
Exon sequences
Seq C1 exon
GTTCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATCTATGCTCCACAAGGCCTCCTCCTGACAGACCCTATTGAGCGAGGACTGCGAGTT
Seq A exon
GTATCTTTTTAGTTCGGATCAGAAAGTCTAAATATTTATAACAAGAAAATGTTGATATTGTTTGGCATTGGCTAGAGAGAATTTAACTCTCATCCTGTATTTGCCCTAGGTAGTTTCTGTGTGAATTGCATACCTACTGTAAACCCCGTGTCTCCAACATTTTTTTTTAAAGCATGTCCCTCCTTCCATTGCATGGTGCAGGTCTCTGTGGTTTGTTTACTATTCTTGTCACCATCTTTCCTGGTGGTTCTGAGGGCATCTTGTAGTAATAATGGGGGTGGTTTGAGTAATGCATTTCAGCTGCAGAAACCCTGAACCTGAAGCCCCTTTGAAATGGATAAACTCATAATGTGTGGTGAGACTTGTCATCCAAATGAATTGCAGTTTCATGGGTTTATCTGACTAGTTGAAATCAGTTACAGCTGCCAGATGTGTAATTTCATTACCTTTGACATACTGTGCATATTTTTAGAGGCAGTAAGCTTTGAAAATCACTAAGTGAATTTGGTAAATAAAATTGCAAAAAACTAATTTAGCTTGATAACTGGAGTAATGGGTAAATAAATTTTTTTAAAAACCTAGGTCACATAATCCCAGGCCTTCCAGCTGATAATAATTTCAGCAGTTTTGTTATACTCTGCAACAATAGTTCTTAAACTTTCAGGGGTCATGAACCCTTTCCCAAGAAAAAAGTTTTCATATAATTTCAGGGTATTTTTAAATCCCTGAATTCATTACCTCCATGGATTCTCAGTTAAGAACTCCCTAGTTCAACAAATAAAGCATCGTTTTCAGAATTTATTTGTTTTGTTTTCAAAACATAAGTTATCAGTGTTTGGGAAGGAACTACATGTGGACTACTATAATTACATTTCTTAAAATTTTCAGCAAATTGGAGAAAGCAAACTTAAGTAGGAAAAATGTTTAATAATTGAAAAATAAAGCAAACTGAAAGCAAAGTCTGCAGATCACACCCTCCACCTTGCCAAGTCCCCCTTTGTGTGTTGTGTCCTGTAGTGTGTTTTCTTAACAGCCATGCTG
Seq C2 exon
TTTAGATTGAAATTACCATTTATGAAGACAGAGGCATGAGCAGTGGAAGATAAACCGAAGAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147533:ENST00000405786:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(0.9=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains