MmuINT1021695 @ mm10
Intron Retention
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57023505-57023936:-
Coord C1 exon
chr17:57023827-57023936
Coord A exon
chr17:57023594-57023826
Coord C2 exon
chr17:57023505-57023593
Length
233 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ACTTCTCTCCTTCCCTGCAGTGC
3' ss Score
11.68
Exon sequences
Seq C1 exon
GGTCCCCTCTGCCCAGTTGGACCAGGCCCTGGGGGACCAGGCCCTGCTGGACCCATGGGGCCTTTCAACCCTGGACCCTTCAACCAGGGGCCTCCAGGGGCACCCCCACA
Seq A exon
GTGAGTACTCCTTGGCTCCTGGGTTATGTTTAGTGTTGTGGGGCCTGGAAAAAGAGGGACAGGCCCTTTCTAACTGGGCTGTGTGCAGCCCAGTGTGACAGGTGCCATGAGACTCTCCTGCCTTAGACCTTGGTCTTGGTTTTATGTCAGCCCCAGCTTTCAGGTATTGGTAAGGACTTTGGTTTTCACACCCTTGAACCAGTTCTCATGGCCACTTCTCTCCTTCCCTGCAG
Seq C2 exon
TGCTGGTGGTCCCCCTCCTCACCAGTACCCGCCTCAGGGCTGGGGCAATACCTACCCCCAGTGGCAGCCACCTGCCCCTCACGACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670:ENSMUST00000007814:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCCTCTGCCCAGTT
R:
TTGGGTCGTGAGGGGCAG
Band lengths:
199-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types