RnoINT0078735 @ rn6
Intron Retention
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10020769-10021196:+
Coord C1 exon
chr9:10020769-10020878
Coord A exon
chr9:10020879-10021107
Coord C2 exon
chr9:10021108-10021196
Length
229 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ACTTCTCTCCTCCCCTGCAGTGC
3' ss Score
11.02
Exon sequences
Seq C1 exon
GGTCCCCTCTGCCCAGTTGGACCAGGCCCTGGGGGACCAGGCCCTGCTGGACCCATGGGGCCTTTCAACCCTGGACCCTTCAACCAGGGGCCTCCAGGGGCACCACCACA
Seq A exon
GTGAGTACTCCTTTGCTCCTGGGTTGCGTTTAGTGTTGTGGGACCTGGAAAAAAAGGGACAGGCCCTTTTTCACTGGGCTATATGCAGCCCACTGTGATAGGTGCCATGAGACTCCACTGCCTTTGACCTTGGTTCTATGTCAGCCCCAGCTTTCTTGGGAGTTGGTAAGGATTTCTATTTTCACATCCTTGAACCAGTTCTCATGGCCACTTCTCTCCTCCCCTGCAG
Seq C2 exon
TGCTGGTGGTCCCCCTCCTCACCAGTACCCGCCTCAGGGCTGGGGCAATACCTACCCCCAGTGGCAACCACCTGCCCCTCATGACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628:ENSRNOT00000072033:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCCTCTGCCCAGTT
R:
TTGGGTCATGAGGGGCAGG
Band lengths:
199-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]