BtaINT0080491 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19268195-19268813:+
Coord C1 exon
chr7:19268195-19268304
Coord A exon
chr7:19268305-19268724
Coord C2 exon
chr7:19268725-19268813
Length
420 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCCCTCGTTTTCGCCCTCAGTGC
3' ss Score
10.76
Exon sequences
Seq C1 exon
GGTCCCCTCTGCCCAGTCGGACCAGGCCCGGGGGGACCAGGCCCTGCCGGCCCCATGGGGCCCTTCAACCCCGGGCCCTTCAATCAGGGCCCACCTGGGGCTCCCCCTCA
Seq A exon
GTGAGTATTCCTGCGGACTCCTGGGATGTGGGGGTCACAGTTTTGGCAAGGAGGCCCAGCCCGCAGGCCCTGTGTCCATGGTCCTCACCTCCGAGAAGGCCATTCCACCTTGCAGAGGTGCCAAACACAACTCTGGCCAACCCTTGTTTTAGAGACACCATTTTTAAAAGATGCTGTGGGTGTTGCCCTTGGTCTCCACTCCACATGTAGATCCTGTAATCCTGTGGTGTAGTGGGGGGTTGGCACATCCTTGAGTCCACATGGCTTGTGTCCCTTGCGTCAGTTGTCTGACGCCTTTCCCTGGGCCAGAAATCAGCAGTTCCACGTAAGCGGTGCTCTGGGCCCCCTTCCAGGCTATGGCCGTCCTCTGCAAGGACCTTGGGGTAACCTGGCTCATGTGTCCCTCGTTTTCGCCCTCAG
Seq C2 exon
TGCTGGAGGCCCCCCTCCTCACCAGTACCCACCCCAGGGCTGGGGCAACACCTACCCTCAGTGGCAGCCGCCTGCTCCTCATGACCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018:ENSBTAT00000027991:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCCTCTGCCCAGTC
R:
TCGGGTCATGAGGAGCAGG
Band lengths:
199-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]