MmuINT1021696 @ mm10
Intron Retention
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57025880-57026914:-
Coord C1 exon
chr17:57026843-57026914
Coord A exon
chr17:57025938-57026842
Coord C2 exon
chr17:57025880-57025937
Length
905 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GCCCCTCTTCTTCTCCACAGATA
3' ss Score
12.47
Exon sequences
Seq C1 exon
TTATTGGCAGAGGTGGTGAGCAGATAAACAAAATCCAGCAGGACTCAGGCTGCAAAGTTCAGATCTCACCAG
Seq A exon
GTATGACCCTCCATCTGTAAAGTTGCCTGGGACCCCAGGGCAAAGCTGGCTCTGTTGTGTGGATATCTCCTGCATAAATACAGAGGCCACAGTGGAAATACTTCTGTATTTTTGTAATGTGTGGGGTGAGCACTTATCATGGCACACACGTGGAGGTCAGAGGTTAGCTCTCCCCCTGTCACGGAATCCAGATACTGAACTTAGGTTATCAGGTTTGGTGATGAGCACCTCTGCTCCCTGAGCCATGTCCCTGCCCTTGTTTTTCCTCTTTGCATTTGGGATGGTCTAGAGGAATGTGGGCATGGGCGCGAAGGCACCACTTTTCCAGGTGGCAGGCTCTATGGTGTCACCTCTCAGTGCTGCAGGAAGCAGAATGGCAGGCTTTCCGGCTGCTTGGTCTGCTCCTGTGGGAGGTGTACATGGGGGTCCCTTTAGATTTGAGCCAGGCTCCTGGGTGCTGTTAAGAGTAATCCTGAGTCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTTGTCTACAAAGTGAGTTCCAAGACAGCCAGGGCAATACAGAGAAACCCTGTCTCGGGAAACAAAACAAAACCAAAAAAAAAAGTAATCCTGAGCTGATTTCTGGAGTCTCCCCTTTCTTCACTATCAGTCCTCTTGCTTTGGCCTCTACGTGCGAGAAGGGGTGTGGTGCTCTGCTTGTCTCCCTCCCAAGTTCTGTCTTCCCCCACTAGATTTTAGAGAAGCAGTCTTCCTAGCATGTTGTGGCAGGGGTGAAATGATTTGTAGAAGAGGGCTGCAGGCTGTTCTGGAAGTTTCCTGTTCCTGCTGTAGCAGCCCTCTTTGTACTGAGCCCCTCTTCTTCTCCACAG
Seq C2 exon
ATAGTGGTGGCCTCCCTGAGCGCAGCGTGTCTCTGACTGGAGCACCTGAGTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670:ENSMUST00000007814:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.950
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types