RnoINT0078744 @ rn6
Intron Retention
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10018012-10018860:+
Coord C1 exon
chr9:10018012-10018083
Coord A exon
chr9:10018084-10018802
Coord C2 exon
chr9:10018803-10018860
Length
719 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GCCCCTCTTCTTCTCTGCAGATA
3' ss Score
12.18
Exon sequences
Seq C1 exon
TCATTGGCAGAGGTGGTGAGCAGATAAACAAAATCCAGCAGGACTCAGGCTGCAAAGTTCAGATCTCACCAG
Seq A exon
GTATGGCCCTCCATTTGTAAAGTTGCCTGGGACCCCAGGGCAAAGCTGGCTCTGCTGGGTAATACTTCCTGCAGCAGTACCGCTCCAGGTGCCACAGTGGCGATATTTCTACTATATTTATTTTTTTATGTGTGAGTTGGGGGTGTGCACATGTCATGATACACACATGGAGGTCAGAGGTTAGCTCTCCCCCCATTATATAGAACCCAGATATTGAACTTAGATTATCAGGTTAGTGGTGAGCACCTTTGCTCCCTGATCCGTGTCCCTGCCCTTGTTTTATCCATTCTGCATTTGGGGTAGTCTGGAGGTGTCGGCCTGGGCGTGGAGGCACCACTTTCCAGGTGGCAGGCAGGATCTCAGGCTGCTTGTGTCTGCTCATGTGGAGCATGTGCATGGGAGCTTCCTTTAGATTTGAGCTGCGGTCCTGGATGCTGTTAGGAGTAATCCTGAGCTGATTTCTGGAGTCTCCCCCTTCTCCCTCACTATCCTCTTGCCTTGACCTCTGGGTGCTAGGAGGATGTGGCACTCTGTGTTTCTCCCTGCTAAGTTCTGTCTTCCCCCTGGGCTTTAAAGAAGCAATCTTCTAGTGTCTCATGGCGGGGGGGGGGGCGGGGGGGAGGGGCGTGATTTGTAGGAGAGGGCTGCAGGCTGCTCTGGAAGTTTCCTGTCCCTACTGCAGCAGCCCCTCTGCACTGAGCCCCTCTTCTTCTCTGCAG
Seq C2 exon
ATAGTGGCGGCCTCCCTGAGCGCAGTGTGTCCCTGACTGGAGCACCAGAGTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628:ENSRNOT00000072033:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.950
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]