MmuINT1022113 @ mm10
Intron Retention
Gene
ENSMUSG00000038366 | Lasp1
Description
LIM and SH3 protein 1 [Source:MGI Symbol;Acc:MGI:109656]
Coordinates
chr11:97824842-97833702:+
Coord C1 exon
chr11:97824842-97824949
Coord A exon
chr11:97824950-97833545
Coord C2 exon
chr11:97833546-97833702
Length
8596 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
CCATTCCTTCTGCCCCACAGATC
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTGCGCTACAAGGAGGAATTTGAGAAGAATAAGGGCAAAGGTTTCAGCGTGGTGGCAGACACGCCTGAGCTGCAGAGAATCAAGAAGACCCAGGACCAGATCAGCAAT
Seq A exon
GTGAGACCCTGCCCTGATGCCCAGGCTACCCTCTGCCCTCCCTTCTCATCCTCTCCCTGACAACCTCAGCAAAGGCCCACGCCGCAGTGGTCAGATCAGAGGCAAGGGGGAGGGAGTTGAGGTACCCGGGAGCCTTTTCTTTGTTCTCCCTCTTTGGTGGGCACTCTGCCCAAATGGCATTTCCTCCTTAAAGAGACTGCTCTTTTAGAGGCAGACAGATAGACACACAAACACATACAGAGTGTCTAAGTCACCTTCCATTCTCTGGAGCAGACCCCGTTCCCTGGTCATGGTGGGGATGGGGTCGGAGTGCAGATTAGATGCTTGTTTTTAGCACCAGGGTCAAAGCTGGGGTTGGGGGTTGAGCCTCCTGTCTGCCTCTGGGTGCTAACACAGCAGTCATTTCCGCCCTCCCTCGACTGCCTCCCACCTCAGTTTGTTCTTCCTTCCTGTGTGAAAACCCAGCTGGCTTTGCCCACAGGCCCTACACCCCCTCCAGGCCCTTTCAGGCCCAGTCAGGGACTGGTCATTGGTGTCTGGTTGTGAGACATAGGCGTGGAGAGTGGGTGGCGGAGTGACTGTCTCTATATGGTTCTGTAGAGCAGCTGGGGTTAGGGATCATCGCTCAGTTCCACCCTTACATAGCCGCAGACCAGCAGCTTGTATGGCTCCGGGTTTGCAGGGGCCGGGTTGGGAGTATGTGGGTAGGTGCTGCTGGGCGTGACGTCACAGAACATGGGCACAAGCCTGAATGCCGAGTTATAGAACATGCCCCGTCATTGGCAACAGACTCCTTATAAATGAAGGATGAAGCAGGCCGATACGATACCCTCGTGTCTATCACAGGAAAGGGTCTACCAGTTTGCCTGTGTCATTCTGGGCTGAGGGACTAAGGATGGGGAAGACAGGATCCAGATTCAGGTGGCTCGCCTTGCACACACCCTCCAGGATCATCTCTCCCCATTCTGTCGCTGGACAAGTCTCATAGCTCACTGGTCTGCGCCGCCCCCCCCCCCCCCAAACACCCGGCACAGAAGCACCCTCTTGCAGGGTGGTTAACGCTCTGATTCTGCCCTCTGTCTTGTTTAGTGGCACACACCTGTAACTCCCAACATTTGGGAGGCTGAGGCAGGAGAGTCATGGATTCAAAGCCACTTGAGGCTGAGGCACGATCAAGAGGTTGAAGCCGTCCTGGGCTTTATAATAAAACACACGCATGCGCACACACACCCTCTTTCCCATGCACACGAAACAAAGAAAACTTCTTAAAGGAGGGAGGGCTGAAGTTTAGTGATAGAGCGTGCACAGGGCCCAGAGTCCCCTCCCTCGCACTACAAAGAGGAAGCATAAGTGACTGCTTTTTGGGGGGGTGGGGGTGGAGGGGGGACTTGGAAAGTTCATTCAGTATTTTCTCTTGTTTCATTAAAAATGCTGGGGGCAGTCCAACCAAGTGGGCTTTGCAACCCAGTTGTTGGGCTGAAGTTTAAAATGAACAGCCTGTTGAATGACTTCTCCTGAGCTGGAGGGCCTGCCTCAGAAGGCTGCAAACCCTTCTTGGCCCCCCAGGAAAGCCTGCTGCAGTTTGCCCTCTTCCAGTCTGGGCCTGGCTCACACCCTGGCGTTTCCTTTCTGCCTCAGATCACACAAAGGGTAAAAGGGTGTGCCCGGAGCGCCTCAGATCGAAAGAGGGGAAGTGGTGTGGTCTTGGGTGATTGGGAAACTGGGATGGCTCACAAAGGTGGAATCATGTGGCTTTGTGTCTTGAGACGCTTCCGGTCAACCTTTGGGACATTTCATTCATTGATTTACCGGGTTAGTTTGGAAGAGAGAAGTAGCCCTAGCCATCTCTGCCTTACTTTCTTGGAAGGTTTCCCGAGTGTCCTAACACCCAGTCTCTTTCACCTACCTTCCTGCACCCTGTTACTCGACGTTGGGCACATTAAATGCCTGAGGAGTTCTGGTAACAAAAGCCTACAGTAGCCACCGTATCTACACTACCGATAGCATCTTATCAGCCTCTTCGGAGAGGCAATTAGCTGATTGCCTTGGTTCGAGGCTGGGGGAGGTGCTTTGGATCTGCCTGAGCTGGCAGGTGTAAAAGCCGGAAGTCTTTCTCCTGGTTTTAGGGAGTGTGACCAGGGTCTGTCTCTGTCAAGAGTCCCGCACAGTCAGCTGGGCTGCAGAGCTCCAAGGAAGAGGGCTTAGCATCCACAAGGACCCATGGGTTCAGTTTTCTCCATACACAAAGGATCCCCTTCTGTCATCTGGGCACTGAATGAAAACTCAGGCCTCTGTCTCCCAGCATTCCAGATTGGCACCCCTGGACCGGAGCCTAACATTCAGCATCATCAGCTTGCCTCGGGGCTTACTGTGGTACCGACTGAAACTTATCGCTTAAACTCATACGGTCTTACCAACCCCTAAGTCCGAGGACACTGGGCATGACTATGTCCCAGAACCCTGAGGGAACTTTAAACCACAGGCAGAACTGTGGCTTAGTTGGGCCAACCTCCAGCATCCCTCTCTGAGAAAGGTGCCGTTCAGAGCCACACTGTATTTTTGGTTCCAAAATAGCATCCTTGTTCGTGGCTCATCTCTTCCCAGTTTAGCACCTAATGACTAGTGGTCAATTCTGAAGGTCAGACTTGTCTTCTAGAGATGGGGACTGGCTTCCCTGGAGAAATCACTTCAGACAAAGGACTTTCACCGGCCAGAGCAGCTGAAAACTAAGTGACTATTTTCCTGGAGTGGTCATCTTTGCTTGGGGATGTGAAGTCTACCTCAGTCCTGTGTAAGGCAAGAGAGTGAGAGAGAGACATGTGGTCTTGTTCCAGGCACGCTGGGCTCCCACCTTCCGTCCCACAGATGCTAGAATGCTCGGGAAGTGCCGAGTGCTTTGTTAGTGATGTGTCATCAGGAGTGTTCAAGGCAGGGCTATCTGCTACTTGCATAGAGCAGAGTCATGCAGAGCCTGGGGTACAGCCCAGTGACAGAATGTGGATTTAGCATGCATGGAAGCCATGAGGCTCAGCTCTAGGGGAGAGGGAAGAGAGGGAATTACATATTTGTTATAACTCTGTCTTCATGTGCTATGGGCGTAAGAGCCTTCCATTTGCAGTCTTTGTGTTTGCTCCAGAGCGCTGAGGGCTTGAGTGGATAAGAAACGAGTTAGCTGGCACCCTTAGTGTGAGCCTTCCTTCCAGTATACATGTCTACACATGCAGCCTCAACTTTTGTGCACCCCCTGTGAACCAGACAACAGTATAAAGCTCTTCTCTCACTTTGCAAATCAAGGACCAGGTGTGTCTCAGGGTGGTGGAGCATTTGCCTCACAGGCATGGGGTCTCAGGGTTAATCTTCAGAGTCCCTTAAAGAAAAAGAAAGAAAGAGAGAGAGAGAAGGAAAGAAAGAGGGAGGAAGGAGGGAGGGAGGGGAAAGGGAAGGATATTCGATTCCTGTCCCAGCTCTAAGGGGTTTGTAGAGCCTTAGTTCTGGGACCCTCTTAGCCCCTATCCCAGGTTTATCAGTAGCTAGAGACTCCTCTGGGCCAGAGAGAGGCCAAGGTGGGGCCAAGCCTTGCTGGTTCCACACTGGCTAATGACCCACAGGATGGTAAAACCATAAAATCTGCAGACACTTTTGCTCCAGGTGAGAATCCTTTGCTTTCCTGTTAGCTAAAAATAATCCACATTCTATGCAGTAAATTAGTTTTAGTCTTCAGTGTTGGGGCCTGATCAATAAATAGTAGTTAGTTGGGGGGTAGGTATTGTGAGAATTACCTGTAATTTAGTGCCCTGTAGGCTGAGGCAGGAAAGATGCTGAGAATTCAAGGTCACCTAGACTACACTCTGAGACCTTGGATGGATGGACGGACAGACGGATGGACAGACAGCCAGGTGTACAGACAGACAGACAGAAGAGAAAGAGAGGGAGGGAGGGAGGGAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGGTAAATAATTGTAAATTTTCATTTCCTCCCCAGAGTTAAATGGTCAGGAGGCAGGCTCATTAGATCCCTTAGATTTCTCAGTTATAGAGATTTGCTTTGTTTTTGTTTATATGCATGTGTTTCTATGCCCCTTGTGTGGGATGCTCTCTCTCAGGCTGGATGAAGGTGTGGATTCCTTAGAACTGGACTTACAGGAGGTTGTGAAACCACCTCACAGGAATGGAGGCTCTAGGGACCAAACTGGAGTCCCCTGGAAGAGAGAGCAGCATATGTTCTTACCCACCGAGCCTTCTCTGTGGTCCTAATTCTCAAGTTTGATTTTTGAAAGGCCACGTTTGTCCATAGCTACTTCCATCTTTCAAGATCTGTCGTTATGGAATGCTTGCTTGCCTGTGTACCTGTGCACCACGCTGTGTGTCTGCTGCTCTAAGAGGCCGGAATGGGCCAGGGAAATCTCTAGACCTGTAGTTTTCAGGCAACTGTGGATTGTCTGTGGATTGTCTGTGGACAGTGAGAACTGAGCCTAGAACCTCAGCATGAGCAGTGGACACTCGTAACTGCCGAGCCATCTCACGTGCCACATGAACCAAGTTTGGCGTCAAACTGGTCCTGCCTGCTTGAGTGCTGCGGTTACATGCCCAGCCTATGTGTGTTCTAAAAATACCAAGAGTCTCTCACCAGTTGCCTTTAATCCCAGCACTCAGGAGACAGAGGCAGGTGGATCTCTTGAGTTCCAGGCCAGCCTGGACTACAGAGGGAGTTCTCTGGACAGCCACATCTACACAGAGAAAAGGAACTCTGTCTCGAAACAAAACAAAACCAAAAACAAACCATGAATCTCTAATAGGAAGCCAGGCTGTGTGTTAGTGGAGAACTAAGGCTCTTAAGTACTAACAGTAGATTCAGTTATGATCCATTTAACCCAGCCCTTCTTCAGCCTTGGTTTTCCCGTCTATAAAATGGGGACAATAGTGACATGTTATTGGGCTGGGTGAGAAAAGAGGGTGCTATATAAGGCCACAAAGCAGGGGTTCAGCCCTCAGCCCTCTCCCCCTCCTCAAGTGGGCTGGCTCGTGAGAGTGAGCTGCTCATTCCATTTAACGCTTCATGTTAGTAAGCCGTGACGAAGCATCATGTGGGGAGGGATGTGTGTGGCCTGGTCAGGCTTTTTGTCAACCACAGACAGGAAGCAGGGAGTCAGAAAGCAGAAACTGAGCCTCAAGGGCACCCGACCCAGTCACACAGAAGGCCTGCCTGACAGCCGTCCTCAGGGGCACCCGGCCTAGTCACACAGAAGGCCTGCCGGGCAGGGGTCCTTCAGCCCCAGTCTCTGAAACCTTGTGCACAGAGACTTGATGGTGCAGGAAGGGTTGGCTCCCTTCTGTGGAGGTCCAGCATTTGGGGACTGGAGAACTGACTCAGCACGGGAGAACACTTCTTGCTCTTGCAGAGAACCTAGGTTCAGTTCCCAGCACCCATGTGCTGGCTCGTGAGCAGAGCCGAGTCCTGACTGTCAGGACCCTCGGGAGGGTAAAGAAACACCCTCCATGTTTGCTTAGGAAGCTGCTAGGTGGGCCAGGAGAAATCACCCTGCTTCCCCTTCTTGCTGAGGGGGAAGTGGAGGGCAGGGGCAGCCTGAACAGAGCCTCCTAACGTTTCAGCCACTATACCCCATGCTTCTGGGTCCTCCCCAGGGTAGGGTAGTCCGGTGATCATCCCCCATTTTTAGGGGGCCTGAAGTACTCTAGATGTTTGGACAGAGTTGAGAGAACAGGGAGGGGTGTGTGGTGCTGCCTCACACTTAGCCTAAGGCTTGTCTGGGTGGGGCTTTGTCCACTGTTCCAGTGAAAGGTCCCGCATAGAGCTCTCCAGGTCCTGCTTCCTCTTGCTTGAAATGAAAGCGTGCATCCGGCTTGAATGATCACTTATTTAGTGCTTGTGTTATCGAGGTCAGGGATAACTTGCAAGTCAGCTTTCTCCTTCTGTGTTTGTTCTGGGAATCAGGCTCAAGTCATCAGGCGAGTGCCCTGACTTTCTGAGTCGCCATCTTGCCAGCCCCCTCCTTCCTTATAGTTCAGGGGAGATAATGTGTGGAATGTGCTTATGGCCTTGGTGTTAAGGGCTGCGCAGATGTTAAGGTTGTTAACACTGACAGTGGCGAGTACACTGATGGTGGTGAGTGGCGTCTGTGGGTCAAGGGAGGATGGGATTGTCTTCCACTGTTCAAGATGCCGGAGTCTTTGGGGTCTTGTTTTATACGCATCTTCCCTCGAGACTCTGACTTTGTTAGATTGGGCCTTGCTATGTAGCCCTGTCAGGCCCAAAGCTCACTATCTAGACCAGGCTGGCCTTGAAAGTTCGTGGCATCCTGCATCTGCCTCCCGAGTGTTAGGTTCATAAGCATATGCCACCCTTCTTGGCCGCACACAGGGACTTCTAAGAAGTGAGGTGGGTGGAGCTAACCTGGAAATACTCCTGTCCACATACCTGCCCTCAGAACTGATGGGCGTCCTCAGGGTCACAGGGGAATAGGTAGTAATTAGAAATTAAAAACAATTTTTTTTAAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTATGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAATCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAACAATTTTTTTTTTAATATGAGAAGGTTGTAGTCAAAAATCCTTGGAAGAGCAGTTCTCTTGTGAACCTTACAGGCGGCATTCTCCACTGCTTCCTATTGGCCACAGAGCAGGGTCCCTAAGGAGCTAGAGAGGTCCCCTGCGTCTGTGCGTACCTCACACCTGTGTGTCCTTCCAGGCGGTGTGAGAGGTTTACCCCTGTGAAATGTTAGTCCAGCTGCCTTGTTCCAGGCTGTTTCAGCATTTGGATGTGTGTCCCTGCTTGGTCGTGAAGGATAGGACAGAGAAAGGGAGAGAGAGGTCTGACTCTACCCAGACTCCATGAGTGGGCGGCTCTCTGCTTCTAGACAACACCCTTCCCACACTCCATTGTCGCGCTGGCTGCTGCCCTGCCTGTCCGCCAGCCCAGACTACAGCAATAACCATTATTTAGCCAGCGGTAGTGACCCAGGTACTCCCAGTTGGCCGCAGCCCTGTGCTTCCTGCCGACTATGCACAGAGAATGCCAAGGGTGGGGAAAGCCTGGGAAGGGGATAACCTAAGCCCTCACTAGGACTCTTGGGTCTCCAGAGCTCTGGGTTTGGCTCCTTCCTTTTCTGTTGTTAAGAACATGAGTGAGTTCGCCCAACTCCCTTACTCATCCCTTCCGCTGCCGTTCTCCAGGGTTGAGAGGGCAGGCCAGAGTCCTGGTAAACAAGCAAGAAGCAACATCTCGGGCAGATGCTGAAGCCTCCAGAGAATGGGACAGTCACCATGCTGTTGTCTCTGTGTCTCATTCCTTCTACCCAAACCCTGGGCCTTCTTTCTTTCCCCTTGGTTGATCTCCTCCCAACCCCCAGTTTCCTCTGGGGGAACAGGGAGTGGACCTCATGGAGGTTCTTCAGGCAGGGAGGGTGTGCCCCCTGGGGGTGCAGGAAGGACACCCAGACTCTCTGCCTGCCGCTTCTCTGCCTCATGTTTTGTCCATCACTTAAGTGTGCATTTTACACTATGTGTTCTGCATTTGTACAGTGACAGTCCTGTATCCTTATTCTAAAGTACTATGTGCTTTGTGGGGATTGCGCTAAAGTCACCCAGGGGAGTATTTGGCCTGTCTTTCGGCAATCCAGGGACTGGCACAGTCATTGTATCATGTGCTGACCATATAAAATGAGCAGCAGCCTAGGGCCGTAAGTAGGAGCGGCTGTGGTGGTTACTGTTGACTGAAGGGGGAGCGAAAAAGGGTCAGGCCCTGCCACCGGGAAGCAAGCTCTCCCTTCTTTCTCCCCTTTCTCCCTCCTCGTCTTCTGTCTTTCTTTCTTTAGAGATAGGGTCTCGGGTAGCCAAGCCATTTTGCACTTTCTGTTTTGAGGTTGGGTCTCACTGTGTAGCCCTAGATGGCCTAGAACTGGCTAAGTAGACCAGGATAGCCTTAGTCTCAGATCTGCCTGTCTCAGCCTCTGAAGTGGTGACGTTTATATACCATGCCTGATTTTGTGCAGAATATGGGGCTTTGTGACCAACCAGTCCTCGCATGGATTTCTTATAGCTGGTATCTCCTTGTACTGTGCAATAGCACATAGCATTAAGGAGGTGAATGTCTGAGTTGAAGGGCAACCTGGTCTACATAGTGAGACGTTCTCACCCAAAAAAAAAAAAAAAAAAAAAAAAGTTTAGCTGAGCTTGTCATGGTCAAATCACTTAGACACACACGCACACACACAACACGGTCTCGCTATGTTGCTCAGACTGGCCTTGCTCTCCCGGCTGCCTCAGTAGCTAGGACGGTGGTCACTTCACCACCACACCCTGCTTGAGTGGCAACAGGAGAGAACTGGTTGGCTCGCAACGGAACCCTTCACCCACCCATTCCTTCTGCCCCACAG
Seq C2 exon
ATCAAATACCATGAGGAGTTTGAGAAGAGCCGCATGGGGCCCAGTGGAGGAGAAGGGGTGGAACCAGAGCGCCGAGAAGCCCAGGACAGCAGCAGCTACCGGAGGCCCACAGAGCAGCAGCAGCCGCAGCCTCACCATATCCCGACCAGTGCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038366:ENSMUST00000043843:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=20.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types