RnoINT0084479 @ rn6
Intron Retention
Gene
ENSRNOG00000004132 | Lasp1
Description
LIM and SH3 protein 1 [Source:RGD Symbol;Acc:68408]
Coordinates
chr10:85770284-85779554:+
Coord C1 exon
chr10:85770284-85770391
Coord A exon
chr10:85770392-85779397
Coord C2 exon
chr10:85779398-85779554
Length
9006 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGC
5' ss Score
5.2
3' ss Seq
CCATCCCTTCTGCCCTACAGATC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTGCGTTACAAGGAGGAGTTTGAGAAGAACAAGGGCAAAGGCTTCAGTGTGGTGGCAGACACGCCTGAACTGCAGAGAATCAAGAAGACCCAGGACCAGATCAGCAAT
Seq A exon
GTGAGCTCCTGCCCCAGATGCCCAAGCTACCCTCTTCCCTCCTTTCTCATCCGTTCCCTGACAACCTCAGGAAAGGCCTGTGTGGTGGTGACCAGATCAGGGGGAAGAGAGAGGTTGAGGTACCCAAGGACCTTTTCTTTGTTGTCCCTCTTTTGTAGGCAGTCTGCCCAAAAGGCATTTCCTCCTTAAAGAGACTTCCCTTTTAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAGTCTAAGTCATCTCCCATTCTCTGGAGCAGGCCCTATTCCCTAGGCATGGTGGTGGGGAGGTCACAGAACGGATTAGATGCTTGTTTTTGGCACCAGGGTCAAAGCTGGGGTTGGGGGTTGAGCCTTCCATCTGCCTCAGGGTGCTAACACAACAGTCATTTCCGCCCTCCCTCGCAGCCTCCTACCTCAGTTTGCTCTTCCTTCCTGTGTGAAAACCCAGTTGGCTTTGCCCACAGGCCCTACACCCACTCCAGGCCCTTTCAGGCCCAGCCAGGGACTGGTCATTGGTGTGTCTGGCAGTTAGACAAGAGCGTGGAGAGCCGGTGGGGGACTGACAGCCTCTATATGGTTCTGCAGAACAGCTGAGGCTAGAGAACAGCCTTCGGTTCCTCCTTTACATAACCACAGACCAGCAGCTTGGGTGGCTCTGGGCTTGCAGGGGCCTGATTTATGGTATGTGGGAGTATCGTGCTGCTGGAAGTGGCCTCACAGAACATGAGCACAAGCCTGAACGCTGAGTTCTAGAACATGCCCAGTCAGCTGCAACAGACTCCTGTAAATGAAGACCGAGGCAGGCCGATATCCTCATGTCTGTAACAGGAAAAGGTCTACCGATTTGTCTGTGTCACCCTGGGCTGAGGGACTAGGGATGGGGAAGACGGGATCCAGATCCAGGTGGCACACCTTGCACACACCCTCTAGGATCCTTTCCGCTGTTCAACTACTCTCACAGCTCACTGGGCTGTGCCCCTGGTGAGCTGGAGTGGAGGCTCAAGTGGCTTCCATAAACACCGGGCATCAACAGAAGTGCCCTCTCACAGGTGATTGCTTTCTTATTCTGTCCTGTCTTGAAACGTTTCCTTTGTCGAGTGACACACGCCTGTAACCAACATTTGGGAGGCTGAGGCAGGAGAATCGTGGATTCAAAGCCACTCGAGGTTGAGGCAAGATCAAGAGGTTGAAGCCATCCTGGGCTTTATAATAAAACATGCACACTCACACACTCTTACACACACGAGTGCACACAAAACAAAACTTCTTAAAGGAACTGAGGGTGTAGTGTAGTGACAGTGTGCTCGGGGGGCCCAGAGTCCCCTCCTTCGCACCAGGAAGAGGAAGCATGAATAACTGCTTTTGGGGGGTGGGGTGCTTGGAGAGTTCATTCAGTGTTTTCTATTCTCGTTTCATGAGAAATGAGTTTTGCAACCTAGTTGTTGAGGTGAAGTTTAAAATAAACAGTCTGATGAAACGGACTTCTCCTCAGAGAACCCTTCTTGGCCCCCAGGAAAGCCTATTATAGTTGCCCTCTTCCAGTCCGGGACTCTCACCCTGGAGTTTCCTTTCTGGCCCAGACCACACAAAGGGTAAGAGGGTGTGTCCTGAGCACCCTGTATTGAAAGAGGGGAAGTGGCGTGGCCTTGGGTGATTGGGAAACTGGAATGGCCCACGAAGCTGGGGTCATGTGGCTTTGTGTCTTGAGATGCCACATTCATTCATTGATTTACCAGGTGTGGAGGAGACAAGTAAGCCCTAGTCATCCCTGCCTCACTTTCTTGGAAGGCTTCCGGAGTGTTCTGACTGACACCCAGTCTCTTTCACTTAACCTTCCTGCACTCTGTTATTGGACATTGGACGCATTAAATGCCTGAGGAGCTCTGGTAACAAAAACCGACTGTAGCCGAGGTTTCTACAGTGCAGATAGCATCTTATCAGCCACTTGAGGGAGGCAATTAGCTGATTGGCCCGGTTCTCTCTGGGCTGGGGGAGGTGCCTGGGATCTGATTTGGAGGCTGAGCGGGGAAGGGTGGATGATGACCCGAGCCTGTCTACCAGAGCCTCCGCACAGGCAGCTGGGCTGTCAGTGGAAGAGTTGCCTGGCATGCACACAGACCCGTGAGTTCAGTTTCCCACACACACAAAGGGTCACCTGTCACCGGGCACTGGGAGAAGACTCAGGTCTCTGTTTCCCCGGCATACAGATTGGTACCCCTGGTCTGGGGCCTAAGAGTCAGCATCGTCAATACACCTCCCGGCTTTCTGTGGTACCCGGTGAAACTTACTGCTTAAATTCAGAAGGTCTCACCAGCCCCTAAGTCTGAGGACATGGGGCATGGCTGTGTCCCAGAACCCCGAGGGAACTTTAAACCACAGGCAGAACTGTGTGGCTAAATTGGGCCAACCTCCAGCGTAACTCTCTGAGGAAGGTGCTGTTCAGAGAGAGCCACATTGTATTTTGGTTCCAAAATAGCGCCCCGTGTGTGGCTCATCCCTTCCCAGTTTAGCACCTAATGACCAGTGGTCAATTCTGAAGGTCAGACTTGTCTTACAGAGATGGAGACTGGCTTCCCTGGAGACATCACGTCAGACAAAGGACTTTCACCAGCCAGAGCAGTTGAAAATCAATGCCCATTTCCCTGGAGTGGTGTTGTTTGCTTGGGGATGTGAAGGCTACCTCAGTCCTATGTAAGGCAAGCGAGTGAAAGAGACACGTGCCTCATTCTAGGCATGCCGGGCTCCCGTCTTCCGTCCCAGAGCTGGGAAGCTCGGGAAATGCAGAGTGCTTTCGTTAGTGATGTGTGGTCAGCGGCGTTCGAGGCAGGGTTCTCTGCTCTACACTGTGAGTAGAGAAGGGACATGAAGAGCCTCGGGTACGGCTCAGTGACAGAATGTGGATTTAGCATGTGTGAGGCCATGAGGCTCATCTCTAGGTGAGAGGGGGAGACGGAAGAGAAGGGATTACATATCTGTTATAATTCTGTCTTCATTAGAGGCTTGCCCTGGCCCCGTGCTATGGAGGCAAGAGCCCTTAACGTTTGTAACTGAGGTGTTTGCCCCAGAGCGCTGAGGACTTTAATGGATGAGACGATTTAGCTGAAGCCATTTGTGTGAGCCTTCCTTCCGCTCTACAGGTCTACAGGTCTAGCTTTCCTTCCTCCCCCCTTATGAACCAGGCACCGTACACAGCTCTTCGCTCACTGCAAATCAAGGACTAGGCTAGGGGCGTCTCATGGTGGTGGAGCACTTACTTACCTCACATGCATGGGGTCTTGGGCTTAATCTTCAGAGCCCCTTCAAAGAAAGAAACAGGGAAAGGAAAGAAAGTTGGATTCCTGGGCCCGGCTCTAAGGGGTTTGTAGAGCATTAGATCTGGGACTCTCTTAGCACCTGTCACAGGTTTATAAGTAGCTAGAGACTCCTCTGGGCTGGAGGGAGGCAGAGGCGGGGCCAAGCCTTGCTGCTTTCACAATGGCAAAGGACCCACAGGACAGTAAAACCATAAACTCTGCAGACACCTTTGCTCCAGGCCAGGAGCCTTTGTTTTTCTGTTAGCTAAAAATAACCCTCATTCCATGCAGTCCCGTCAGTGTCTGGGCCTGATCAATAAATAGTAATTAGTTGCAGGGTATTGCGAGATAAATCTGTAATTTAGTGGCCTGTAGGCTGAGGCAGGAAGGATGCTGAGAATTCAAGGTCACCTAGACAACACCATGAGACCTTGGATGGATAGACGGGTAGACAGACAGATAGACAGGATAGAAAGAGCTAAATAACTGCAAATTTTCATTTCCTTCCCAGAGTTCAATGGTCAGGAGTCGGGCTCATTAGAGGATCGTTTAGATTTCTCAATTACGAAGATTTGTTTTATTTTTATTTATGTGCATGTGTTTCTTTTTCAAAGATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGGAGCTGGGGACCGAACCCAGGGCCTTGCTCTTGATAGGCAAGCGCTCTACCACTGAGCTAAATCCACAACCCCTATTTATTTATTTATTTATTTTATTTATGTGAGGACACTGTCCCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGTCCTATATGTGTGTTTCTATGCCACGTGTGTGGGGTGCTCTCTGAGGCCAGATGGAGGTGTGGAATCCTTGGAACTGGACTTACAGGAGGTCGTGAAGCCAGTCACCTCACAGAATGAATGCTATAGGCTATAATGAATGAATGAATGCTATAGGGACTAAACTTGAGTGCCCTGGACGTTCTTAACCACTGAGCCTTCTCTGAGGTCCTAATGCTCGAGTTGATTTTGAAAGGCTGAATTTATCCATAGCTTCTTTTCGTCTTCCAGGATCTGTTTTTATGGAGTGTCTGCTTGCCTGTGTACCACGCTGTGTGTCTGCTCCTCTAAGAAGCCAGAACGGGCCATGGAAATCCCTAGAACTGTAGTTTATGGGTAGCCATGGACAGTGAGAACTGAACCCAGATCCTTAGCCTGAGCCGTGGGCACTCGTAACTGCTGGGTCACCTCGCGTGACAGTTGTACCACAGAAGCCAAGTTTGGCCTCCCATTGCCTCTTCCTGACTGTGTGCTGCGGTTACATGCCCAGCTCGTGTGTGTTCTAGAAATACTATGAGTGCCTTTAATCCTAGCACTCAGGAGGCAGAGCAGGTAGATCTCTGAGTTCGAGGCCAGCCTAGTCCACAGAGGGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAGAAAACAAAAATAAAAAAATAAAAACAAAACAAAAACAAACCAGGAATCTCTTTAACAGGAAGCCAGGCTGTGTGTTGGTGGAGAACTAAGGCTCTTTTGTGCTGACGTAGTAGATTCTGTTATGATCCATTTAACCTGGCCCTTCTTCCACCTCGGTTTTCCCATCTATAAAATGGGGACAATAGCGACATGGACTGGGTGAGAAAAGGGGTAATATATATATATAAGACCACACACAAAGCAGGAGTTCACCCTCTCAGCCCTCTCCCTCCCCAATTGGGCTGACTTGTGAAAATGAGCTGAATATTCCACTTAATGCTTTCTGTTGGTAAGCCATGACACAGCATCATGTGAGGAGGGACGTGTGCCTGTCGGGCTCTCTGTCGACCACAGACAGGAAGCAAGTGGTCAGAAAGCAGAATTAACTGGCCGCCTTCAAGGGCACCCTACCTAGTCACACAAAAGGCCTGGGGACAAGGCTCCTTCAGCTCCAGGCACTGAACCCTTGTGTACAGGAAGGAGGCTTGGCTCTCCTTCCATGGAGGCCCAGCATTTGGGCTCTTTAAAGATCAGAACTTTGGGGGCTGGGGAGCTGACTCAACAGTTAGGAGCAGTTATTGCTCTTGCAGAGAACCTAGGTTCGGTTCCCAGCACCCACATGATGGCTCACTATAAGAACTGGGTCCTGATTGGCCGGATCATGGAGAGGGAGGTGTTTCCTGGGCTGTTTGCTTAGGAAGCTGCTAGGTGGGCCAGGGGAGATTACCCAGCTTCCCCCTTTTTGCTGAGGAGGAAGGGCAGTGGGCAGCCTGAACGTGGCCTCACTTTTCAGCCATTATAAAACCATTTTAAAACCCATGCTTTTGGGGTTTGCATTTCTAGGTCCTCCCCATGGTAGGGTGATCCAATGATTATCCCCCATTTTTAGGGGGCCTGAGGTACTCTGATGTTTGGACAGAAGTTGAGAGAATAGGAAGGGGTGTGTGGTCCTGCCCCACACTTGTTCTCAGGAAAAGGCCTGCCTAGGTGGGACTTTGTCCACTGTCCCAGTGAAGGGTCCTCCACAGAGGTCTCCCAAGTCCTATTTACTCTTGTTTGAAGTGGAAGTTAAAAGTGTCCATCCGGCTTGAATTATCTCTTCTGTAGCGCGTGTGTTGTGGAGGCCAGAGGATAACTCACAGGGCAGCTTTCTCCCTCTGCGTTTGTTCTGGAATTCAACTCAGGTCATCAAGCAAGTGCCTTTACTGTCTGAGTTGTCTCCCCAGCCCCCTACGTATAGGTCAGGGAGATGATGTATTGGATGCTTTAATGGCCTCGGTGTTAAGTGCTACCCAGATGTTAAGGCTGTTAATATGAACAGTGACATCCGTGGGCCAAGGGAGGACGAGAATGTCTGATGCTGTCTTCCACTAATCAGAATGCCTGAGTCTTTGGGGTCTCCTTTTATAGGCATCTTCCCACAAGTAGCAACTCTGATTTTGTTAGGCAGGGTCTTGCTGTCCTGCCCTGTCAGGCCCAGAGCTCTCCATCTAGACTAGACTGGACTGGAAAGGTCGTGACATTCTCCTGCTTCTACCTCCCGAGTGCTAGGTTTATAAGAATATGCCATTATGGGGCTGGGGATTTAGCTCAGTGGTAGAACGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATATGCCATTATTCCTGGCTGCCCACAGTGACTTCTAAGAAGTGAGGTGGGCGGACCTTACGTGGAATTGCACTGGTCCACATACCTGCCTTCAAACCTGATGGCATTCTCAGGGTCACATGGGAATAGGTGAATTATTAAATTATCTAATTGTAAAATTAGAAATGAAAAAGTATCAATTTTTTTTTCTTTTTTTTTATTTCGGAGCTGGGGACCGAACCCAGGGCTAGGCAAGCGCTCTATCACTGAGCTAAATCCCCAACCCCAAAAGTCTTAATTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTTAATTTTTTAATATGGGAAGGTTGTAGACAAAAAAAATTCGAAGAGCAGTCTTTTGAGCCTTTCAGGTGGTATTCTCTACTGCTTCCTATTGGCCACAGAGCAGAGTCCTAAGGAGCTAGAGAGGTGTCCTGCGTCCGTGCGTACCTCACGTCTGTGTGTCCTTCCAGGTGGTATGAGGGGTTAAGTGTTAGTCCAGCTGCCTTGTTCCAGACTGTTTCACCATTTGGGTGTGTGTCCCTGCGTGTCCCTGCTCGATCACGAGAGGATAAGACAGAGAAAGGGAGAGGTCTGACTCTCTACTCAGACTCCGTGAGTGGGCAGCCCTCTGCTTCTAGACAACACCCCTCCCACACTCCACGGCTGCGCTGGCTGCTGCCCTGCCTGTCTGCCGGCCCAGACTACAGCAGTAACCATTATTTAGCCGGCAGCAGTGACCCAGGTATTCCCAGTTGGCCACAGCCCTGTGCTTCCTGCAGGCCGTGTGCAGGGAATGCTAAGGGCGAGAGGAAGCAGCAGAGAAAGCCTGGGAAGGGGAAGCCTCAGCACTCACCAGGACTCGTAGCTCTCCAGGGTTATGGGTTTGGCTCCTTCCTTTTTTGTTGTAAGAACATGAGTGGGTTTGCCCAGCTCCCTTACTCATTCCCTCCGCTGCCGTTCTCCAGGGTTAAGGAAAAGGCAGGACAGAGTCCTGGTAAACAAGCGAGAATCAACCGCTCAGCCTCCAGAGGGTGGGGCAGTCACCCTGCTGTTTGCCCGGGAGGATCAAGTGTTCAGCTTGTCTCTCTGTTTCATTCCTTCTACCTGGACCCTGGGCCTTCTCTCCCCTTGGTTTCCTCTGTGGGAGAGTAGGGAGTTGACCTCACCAAGGTTCTTCAAGCAGGGAGGATGTGTCCCATGAGGGTGCAGGAAGGACACTTAGAATCTCTGCCTGCTGCCTCTCTGCCTCCTATTTTTTCTGCCCATCACTTTCTGTGCATTTTATGATATACATTCCATATTTGAACAGTAATAGTTCTGTGTGCTTATTCTAAAGTACCATGTGCTTTGTGAGGACCGCGCTAAAGTCACCTGGGAGAATATTTGGCTGGCTTTTCAGCAATCCGGGGACTGGCACAGTCATTGTGCCATGTGGTGACATTAGGCATGTGGCACGGGGCCAGTAAATAGCTGTAGTGGTTACTTTTGAGTCTAAGGAGAGCGAGAAGGATTCAGACCCTGCCACAGGGAAGCAAGCCCCACCTTCTCCCTCCTCATCTTCTCTCTTTATTTAGAGATCGTGTCTCGTGTAGCCAAGCCATTTTGCACGTTTTGTTTGTTTTGAGATAGGGTCTCACTGTGTAGCCCTGGTTGGCCTAGAACTTGTTATGTAGACTGGGATGGCTTTAAACTCACGTCTACTGGTCTCTGCCTGTGGTGATGTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTGTGGTGATGTTTTATATACCATGCCTGATTGTGTGCAGAATGTAGGGCTTTATGTCTGCTCTACTAGACCAAGCACTCCTTCAACTGAACCAGCCAATCCTTGCGTGGACTTCCTATAGCTGCTCTCTCCTTGTCCTGTGTGGTAGCACATAGCATTGAGGAAGTGAGTATCTGTGAGCTGAAGGGCAGCCTGGTGTACATAGTGAGACCTCGTCTCCAAGGGGAGGCTGCAAAGAAGGTTTACCTAGCTTGTCGTGGTTAAATCACTTAGAGAGCTGGTACGGTCTTTCTGTAGCTCTCCTGGAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCTTGCTCCGCCCCGCTGCCTCAGGAGCTAGCACAAGGGGCACTTACTGCCATGCCCAGCGTGAGTGGCCGTGGGAGAGGACTGATTGGCTCACCCATCCCTTCTGCCCTACAG
Seq C2 exon
ATCAAATACCATGAGGAGTTTGAGAAGAGCCGCATGGGGCCCAGCGGAGGTGAAGGCATAGAGCCAGAGCGCCGAGAAGCCCAGGACAGCAGCAGCTACCGGAGGCCCACGGAGCAGCAACAGCCACAGCCCCACCATATCCCGACCAGTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004132:ENSRNOT00000005522:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=20.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]