MmuINT1023500 @ mm10
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113123117-113126877:+
Coord C1 exon
chr12:113123117-113123239
Coord A exon
chr12:113123240-113126779
Coord C2 exon
chr12:113126780-113126877
Length
3540 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCAG
5' ss Score
-0.37
3' ss Seq
ATTTGTTCCCTGTAGGTGAGGAG
3' ss Score
-3.01
Exon sequences
Seq C1 exon
GATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGGGAAATTCGTGTAGGAAACCGGTACCAGGCTGACATCACTGACTTGCTGAAAGAAGGTGAG
Seq A exon
GTTCAGGCTGGGCCAGCAGCATGGAGGAGGCTGGAGGTAGTACTTGTAGCTTTTACCTAGGCTTCAGCTCCTCCAAGCCTCCGTCCTAGTGGACATTGGCATCCAGCCGCAAGGCTCAAACCCTAGAGCCGCCTGTTGAGCCCTGTGGCTCCTTGACCTCGGATTTCCCTTTGGTAGCTCATTATGAGTTTGATTTTATACTGTTTCTGCTAGGAAAGTATTCTGCCACGTGCCACATTCCCACCCTTGTTCCTTACTTATTTTATTCTTTTGCCTGCATGTATGTCAGGGCACCACTTGTGTGCAGTGTCTATGGAAGTCAGAAGGCATTAGGGTTAGAGAAGGTTGTGAGCCTCCCTGTGGGGGCTAGGAGGTGAGTGAGCCCAGGTTTCCTGGGAAAGCAGTCAGTGCTGTTAACCACTGAGCCATTTCCCCAGCTCCATCCCATGTTTTTTGAGACAGGGTCTCATTTATTTATATAGCCCAAACTGACCTTGAACTTGCCTTCCTCTTTGGCAAACCATCACACCTGGCTCATTATAATTCTACATTCATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGTCTGGTTTTTCATTCCCCAATGTGAGACTCAGGAATCCAATTTGTCCTTCAAGTCCTTAGTGTACTTTGGAGGTCAGAGGACAATTTGTAGAGTTGGTTCTGTCCTCTCACGTGGTTCTGGAGGCTGAACTCAGGTTGTCAGGCTTAGCAGCAAGCACCTTAGCGTACTGAGTCATCTCACCAGCCCCTCCCCATTCGGGGGGTTAAAATGTCTGTCTGTCTGTCTGTCTTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATGTAGGGGTTTAGTCAGGAATGCCCTACAAGAATTGAGTCTATCCTAGGTGGCAGCAGAGATCAAACTCAGGTTGTCAGGCCTGGTGGGAAGTGCGAGCAGATTGACATGAGCTGGCTCAGACCTGGCATCCAAGGCGTGCAGGTCCCTTCCACATCTCGCCTCAGCATCCCTGGCAAAATGCTCTGATGGGCTCCAGATGCTCTGTCTCCTAAGGAAGCACTCAGCCTCTGACCCAGTCAGGCTCCGCATTTCTGGAACTGTTGGCTTAGCTGGGACTGGGGGCTCAGAGAGCACCACTTCCGTGCACCAAGTCTCTGAGGCAATTGCTGTTTGGTTGTTTTGGGGGCCTCAGCTACAGCTTGTCATATGCTAGGACAGTGTGCTGCCTTCAGGGTGGCTGGCCCGACGTAGCACCTGTTTCCTGCGTTTTCCATGCCCTTCCCTTTGCCTTGTGGTTTCTGTTTGATTTTCTGGTGTTTGTTGGACCTCAGAATGAGGTGCTAAGCCCACTTGGGTGGCAGCTGGGTGTGGCCTGGCTGTTGGAGTAGGTGCGTCCCTCTGAGCTGTGTATGGGAGGCTGGTCTTTTCTGACTTCTGTTCCGTGCTTGAGCCTCGTTACCCTGTCTCTAACACCTGGGCCTCCAGATGCCCATGCACAACCTCATAGCCAGAGCCAGCCAGTTGCTGCCTGTTCAGCTTATTCCCCAAATAGCCCCAGCCTTAAAGCTCTGTAGACAGGCCTGAACTCTGTCCAGCCTCCTAACTCTGAAGCCACGGTATCCGCTTTCTCAGCCTGACTGAAGGGAAGTGTCAGAGGGAAGTGTCAGAGGCCAGCCGAGGCTGTCACAGTCACATGAACTTACACAGGGACCAGAGAGGTGGGAGAGGTCTCAAAGGTCAGAGGACCTTGCTTTCAGCCTCTGTTTCTCAGAATCAAGCTGCTCCAGGTGTCCCAGGCATGTGTGGGCTCATTGGCTAGTGCTAGGAGAACCCCCAAGAAAGCTATGCTTTGTCTGTGGGGCCTGCCTGTGAAAAAAAGCAGGACCTCAGGGGAGTCTCCAGCTACCACAGTGTCCTCCTCCTTCCTAGTCTCTGCAGCCTTTCGACACAAAGGTCAGCGGCTTCCCCATGGTATCTGTCTTCAAATTAAGCTTTTAGCCGGGCGTGGTGGCACATGCCTTCAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGAGTTCTGAGTTCAAGGACAGCCTGGTCTACAGAGAGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTGTAATTTAAAAAATTAAACTTTTAGAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACCTCCTGTCTGGACAAGACCAGAAGTGTTGCATCTCTTAGAGCTGGAGATACTAATGTTTGTGAGCTCTGGTAGACAGGAGTACTGGAAATTGGAACTTAAGACCTTTGGAAGAGCAATGTATGCTCTTGACGGCTGAGCCATGTCTCCGCCCCAGTGTGTGCATTTTGAATGATGACATGGAATGCTTGCCTTCATTCACTGTATTGGAAATTTCAAAGTGAGTGATTCTGGTTGAGTTCCACAGGCATTCTTTGCTCTCTGTTCCAGGCAGTTACAGATCATTTGCTATGAACAGCACCTTGGTTTTGGGGACCTTAGAATGTCAAGGGTTGTACCCTGTGACACCCCCCACCCCCCGATTAAGCACAGTTCACATCAAGACTGAAACCCACTCACAACATTGGGGGAAAGGCCACTGTCCTGGGCCTGCATAGGCTGGAGTTTGTAGCCTCCAGCTGTAGCCTGTGAGCATCGGAGAACCTGATAGTTCCATTCCTCCCATGGCTCCTGCCGGGTCTTCTGCAGGGGTGGGACCCTCATCCTCTGTGACTAGCTGGTCATAAGAGCTCCCTTGCCTTGCTCTGCTCTGTCCTGGATTTAGGACCCATAGACAGTAACTCTCCAAAGGGTCAGGAATATCTTCTTGGCGACAGACATCCAGTCCTTCTGTTACTCAGTGTCCTGACTAGGAACCCCGTATTCTTCGGGAACTCAAGTGTAGGCTGTTCATGGCCACATGGTGCGTTGATGCCAAGGGCCAAAGGGGAGTTGATGGGATCTGATGCAAACTGGAAGCTTGATACCTTCACTCAATTATGAATGTAGCCCTTGGCTGGAGACTCAGACAATGGACGACTATGGGATATCTCCTGGGGCCTTTCCCTAGAGTCAGGCCTGGCCTGGCTCGTGACAAAATTCTCCTTGGAACTCTTGGTCCTGCTGTATGTCTTTTAATGAGTATACAGTTATTTCATCAGGAATTGTCCCCTAACTCCCAGAATAATAGAAATCCAAGAGCAGAGTACCTGACCCCTACCCAACCCCTCAGGTCACTCCAGCCCCAAGGGGTGTGTGTGTGTGCCAGCCTCTCCTCCAAGCCAGCATCTCATATCACCTGGGGAGAAGTGGCACCATGGGACCATGGGCAGACTTTTGGTTACGCTGGACTGTTCTCCACAGCCTTTGCTGTTCTCCCTGAGCCACATTTGTTCCCTGTAGGTGAG
Seq C2 exon
GAGGACGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144:ENSMUST00000009099:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.063 A=NA C2=0.165
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(11.8=46.3),PF0144819=ELM2=PU(32.7=43.9)
A:
NA
C2:
PF0144819=ELM2=FE(58.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types