RnoINT0094968 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137935890-137939116:+
Coord C1 exon
chr6:137935890-137936007
Coord A exon
chr6:137936008-137939013
Coord C2 exon
chr6:137939014-137939116
Length
3006 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ACTACACTTGTTCCCCATAGGTG
3' ss Score
9.98
Exon sequences
Seq C1 exon
GATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGCGAAATTCGTGTAGGGAACCGGTACCAGGCTGACATCACTGATTTGCTGAAAGACG
Seq A exon
GTGAGGTTCAGGCTGGGCCAGCAGCATGGAGGAGGCTGGAGAATGCTCTCGGCTTTACCTAGGCTTCCGCCCTTCCAGGCCTCCTTCCTAGTGGACACTGGCCGACCTCTAGCTGCAAGTCTCAAACCCGACAGCTGCCTGCTCGGCCTGCGACTCCTCAGCCTCAGGTTTCTCTGGGGCAGCTCATTATGAATTCGATTTATACTGTTGCTGCCACATGCCACGCCCAGCCTCGTTCCTTACTTATTTTGTTCTTTTATTTATATTTTACGCGTATGGTATTTTGCCTACGTGCTCGTCAGTGCACCACGTCTGTGCGGGTGTGTGTGTGTGTGGTCAGAAGATAACTTGCTGGAGTCTGTTTGTTCATCCCCCAATGTGAGACTCAGGAGTTAAACTCAGGTCCTTAGTGTACTTTGGAGGTCAGAGAACAACTTGTAGGTTTGTCTCTGTCCTAGCATGTGGGTCTGGAGATTGCACTCAGGTTGTCAGGCTTAGCAGCAAGCACCTCTGCATACTGATCATCTCACCAGCCCCTCCCCCTTGGCGGAGTTAAAATTACATTCATCCGTTCATGCGTCTGTCTGTCCGTCCATCCATCCGTCCACCCACCCACCCATCCATCCACATGTAGGGGTTTGGTCAGAATTGAGTCTACCTAGGTGGGCAGCAGAGATCAGGTTGTCAGGTGGGTGGGAAGTGCCGAGCAGATTGACATCCAGGGCTGCAGGCCCCTCCCACATCTTCCCTCAGCAGCCCTGGCAGAATGATCTGATGAGCTCGAGACCCTGGTCTTTGCCTCCTGATAGGGCTCTCAGGCTCTGACCCAGTCAGGCCCCATATCCCACAGAGCTGTTAGCTCAGCTGGGACTGAAGGTTCTGAGAGAGCAGCACTTCTGTGCCCCAGTCTCAGGCACTGCTGTTTGGTGGTTTGGGGTGCCTCAGCTAGAACTGGCTTATGCTAGGGCAGCGTGCTGTCTTCAGAGTGGCTGGCCTGACACGGCACTTGTTTCCTGCTTTTCCCTGCCCTTCCTTCCCTTTTGCTTTATGGTTTCTGTTTGGTTTTCTGGTATTTATTGGACCTCAGAGTAAGGTGCTAAGCCCACTTGGGTGGCAGCTTGGTGGGTCCTGGCTTCCCTCTGAGCTGTGTATGGGAGGCTGCCCTTTGTTTGCTGACTTCTATTCAGTGCTTGAGCCTCATTACCCTGTCTCTAACACCTGGGCATCCTGATGCCCGTGCACAACCTCAGCCAGAGCCAGCCGACTGCTGCCTTCTTTAGCTTCTTCCTCAAATAGCCCCAGCCCTCAAGCTCTGTAGACAGGCCTGAACCATGTCCAGCCTCCTGGGCTAAAGCCATAGTGTCTGCTTTCTCAGCCTGGCTGAGGGGAAGGGTCAGAGGAAAGTCAGGCCTCGGCTGTCACAGTCACATGAACTTGCACAGGGACCAGAGAGGTGGGAGAGGTCTCAAAGGTCAGAGGACCTTGCTTTGAGCAAGGTCAAAATCAAGCAGTTCCTCAAAATCAAGCAGCTCCAAGAGTCCTAGACATTTGTGGGCTCATTGGCAAGTGCTAGAAGATCCCCAAGAGAGCCACACTTTGGCTGTAGGGCCTGTCTGTGGAAAAAAAGCAGGCTCCCAGAGGAGTCTCCGAACACCAGCATGGCCTTCTTTCCTAGTCTCTGTAGCCTCTTGACACAAAGGTCAGTGGCTTCCCCATAGTGAAAATTAAGTTTTTAGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGTATCTCCTGTCTGGACAAGACCAGAAGTGTTGTATCTCCTGGAGCTAAAGATCCTGGTGTTTGTGAGCTGGTAGACAGGGGTACTGGAAATTGGAACTTGGGTCCTTTGGAAGTGCAATGCCTGCTCCTGACCGCTGAGCCATCTCTCCAGCCCCACAGTGTGTGTTTTGAATGATATAAACTGGAATGCTTGCCTTCGTTCACTGAGTTGGAAATTTCAAAGTGAGCGATGTGGGTTGGTTCCATAGGTGTTCTCTGCTCTCTGTTCCAAGCAATGGCAGGCCATTTGCTATGAACAGCATCTTGGTTTTGGAGACCTTGGAATTCCAAGGGCTGTCCTTGTGACCCCTGATTAAGCACGGTCCATATCAAGACTGAAACCCACCCACAGCATTGGGGGAAAATGCCACTGTACTGGGCCTGTGTAGGCTGGAGTTTATAGAGTCCGGCTGTGGTCCGAGAGCAGCAGAGGACCTGATGATTCAGGCTCCTCAGTTTCTGCCACAGTCCCTGCAGGGTCTTCTGCAGTGGTGGGCTTCCAACTCAGGACCCTCATCCCCTGTGACTAGCAGATCATAAGACTTGCCTTGCCTTGCTCTGTCCTGGATTTAGGACCCATAGATAGTAACTCTTCAAGAGGGTCAGGAATATCTCCTTGTAGACATCCAGTCCTTCTGTTAAAGAGCTTACTCAGTGCCCTGAACAGGAACCCAGTATTCTGTGGGGACTCAAGTGTAGGCTGTTCATGGCCACATGGTGGGTTGATGCCAAGGGTCAAAGGGGAGTTGATGGGATCTGATGCAAACTTCGAAGCTTGATACCTTCACTAAATTATGAATGTAGCCCTTGGCTAGAGAACCAGACAATGGATTACAGTGGGATTTCTCCTGGGGCATTTTCCCTAGAGTCATGCCTGGCCTGGCTTGTGACAAAATTCTCCTTAGGATCCTTGATCCTGCTGTATGCTCTTTATGTGTATATGGTTATTTCATCAGGAATTGTTCCCTAATTCCCAGAATAATAGAAATCCAAGAGCAGAGTACCTGACCTCCACCACAAGGGTTGGGTGTGTGTGCCAGCTTCCCCTCTAGGCCAGCATCTCCTGTCACCTAGGGAGAAGTGGTGCCATGAACCTGGGAACAAACAGACTTGTGGTTACACTGGACATTTCCACAGCCTTTGCTGTTCTCCCTAAACTACACTTGTTCCCCATAG
Seq C2 exon
GTGAGGAGGACGGCCGCGATCAGTCGAAGCTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTAGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(12.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
NA
C2:
PF0144819=ELM2=FE(61.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]