MmuINT1034640 @ mm10
Intron Retention
Gene
ENSMUSG00000021614 | Vcan
Description
versican [Source:MGI Symbol;Acc:MGI:102889]
Coordinates
chr13:89688285-89705797:-
Coord C1 exon
chr13:89702918-89705797
Coord A exon
chr13:89693502-89702917
Coord C2 exon
chr13:89688285-89693501
Length
9416 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAACTCTTTGTTTTTTTCAGGTC
3' ss Score
11
Exon sequences
Seq C1 exon
CTAAACAGAATATATCAGAGGCAACCACCATCGAAATGAATATCCTCGCAGAAACTTCATCACCCAGTTTATCCAAAGAACCACACATGGTACCTGACAGAGCTACACCAGTCATTCCATTAGCCACCGAATTACCTATTTTTACCACACACTTCCCTCCTGCAGGAAATATAGTCAATTCTGAACAGAAATCTGTAGTCTATTCTCAGGCTATCACAGGCAGATTAGCCATGGAATCACCCACAACTACTCGGAATACCATCAACTCTTGGGATCTGAATGACTCCTTGGCTTCTGGGTCAGGGCCACTTGGAATGCCAGACATATCTGAAATTAAGGAGGAGGAACTCCGAAGTACAACTGTCATCTCCCAACATGCTACTGGCTCACAGGCTGTAATTACAGAGGATACGCAAACACATGAATCAGTTTCACAGATTGAACAAATAGAAGTGGGCCCCTTAGTAACATCCATGGAAATCACAAATCATATTTCTCTCAAGGAATTGCCAGAAAAAAACAAAACACCATATGAATCCACAGAAGTGACCCTGGAACACACGACTGAAATGCCAACGGTAAGCGCCAGTCCTGAATTGGCAACCACAAGTCACTATGGATTCACCTTGAGAGAAGATGATAGAGAAGACAGAACACTGACAGTTAGATCTGATCAGAGCACTCGGGTCTTTAGCCAAATCCCCGAAGTCATCACAGTATCAAAAACATCAGAAGACACTACCTACTCACAGCTAGGGGACTTAGAGTCCATTTCAACATCAACAATAACCATGCTTGGCACAGATAGATCACTGATAGATAAAGAGAAAGAACCCAAAACTAATGGTAAGGTGACTGAAGATGAGTTTGGTCAATCACAGCCTACAACTACCTTCCCATCACAGCATCTTACAGAAGTAGAATTACTTCCATATTCTGGTGACACAACATCAGTAGAGGGAATATCCACAGTTATTTATCCATCATTACAAACAGATGTGACACAAGGAAGAGAGAGGACAGAAACACCAAGACCAGAGTTAAAAAAAGATCCGTACACAGTTGATGAAATACCAGAAAAGGTCACTAAAGATCCATTTATAGGTAAAACAGAAGAAGTCTTCTCTGGAATGCCTCTCTCTACATCTTCCTCAGAGTCCTCAGTGGAAAGGACAGAATCTGTTTCCCCTGCATTGACAATTGAGAAGTTAACTGTGAAGCCAACAGAAGCAAGAGATGTGGAAGAAATGACAACCCTGACTAGATTAGAAACAGATGTTACAAAGTCTGACAAAGATGTTACAAGAGTTCATTTGACCCACAGTACTTTAAATGTGGAAGTGGTCACAGTATCAAAATGGCCAGGGGATGAAGATAATTCAACTTCAAAGCCTTTACCCTCAACAGAACATGCAGGCTTTACAAAATTGCCTCCTGTCCCACTTAGTACTATAGGAATAAATGGAAAAGATAAAGAAATCCCAAGTTTCACAGATGGAGGAGGTGAATACACTCTTTTCCCAGATGGTACTCCAAAACCATTAGAAAAGGTTTCTGAAGAAGATTTAGCATCTGGAGAATTGACAGTCACCTTTCATACATCTACATCAATTGGCAGTGCAGAAAAGTCAGCTTCAGGAGAGCCTACAACTGGAGACAGGTTTCTGCCCACCACAAGCACAGAAGACCAGGTCATCAATGCAACTGCGGAAGGGAGTGCTTTGGGTGAAGATATAGAAGCCTCCAAGCCACTATTTACTGGCCCCCCATTTGTCCACACCTCCGATGTAGAAGAATTGGCATTTGTTAATTATAGTAGCACGCAGGAGCCCACTACTTATGTAGACATATCCCATACTAGTCCTCTTTCTATAATTCCCAAGACAGAATGGAGTGTGTTGGAAACTTCTGTTTCACTAGAAGATGAGATTCTAGGCAAATCTGATCAAGATATCCTTGAACAGACTCATCTAGAAGCAACCATGTCTCCTGGAGCTTTGAGGACAACAGGAGTTTCACAGGGAGAAACCCAGGAAGAACCACAAACTCCAGGGAGCCCATTTCCTACTTTCAGTTCTACTGCAGTTATGGCCAAGGAGACAACAGCATTTGAAGAGGGGGAGGGGTCAACATATACTCCCTCTGAAGGCAGATTGATGACAGGTTCTGAAAGAGTCCCAGGTTTAGAAACAACTCCAGTTGGCACATCTTATCCACCTGGTGCAATAACAGACCAGGAAGTGGAAATGGATACAATGGTAACACTGATGTCAACCATTAGGCCAACAGTGGTTTCAAGTACAGAGCCAGAAGTAATTTATGAAGCAGAAGGTAGTAGTCCAACAGAATTTGCATCAACTTTGAGGCCTTTCCAGACTCATGTCACACAGCTTATGGAAGAAACTACTGAGGAAGGAAAAAAGGCATCCTTAGATTATACAGATTTAGGCTCAGGGTTATTTGAACCCAGAGCCACCGAGCTCCCAAAATTTCCAACAACTCCAAGTGATATCAGTGTCTTTACTGCCATCGACAGCCTTCACAGAACGCCACCCTTGAGTCCGTCTTCATCATTCACTGAGGAACAACGTGTCTTTGAGGAAGAGTCCAGTGAGAAAACAACAGGTGACATACTTCCTGGAGAATCTGTAACACAGCACCCTGTGACAACTCTCATTGATATCGTAGCCATGAAAACAGAATCTGATATTGATCACATGACCTCAAAACCTCCTGTAACACAGCCAACAAGACCATCAGTTGTGGAAAGAAAAACAACCTCCAAAACTCAAGAGTTGTCTACTTCAACACCTGCAGCAGGGACCAAGTTCCACCCTGACATAAATGTTTATATTATTGAGGTCAGAGAAAACAAGACAG
Seq A exon
GTAAGTCTTTGCTTTCAAGGCAATCAGCATTTTCTCTTGAAAGTTAAAATGTCCATCATACCAAATGCTGCCATTAGATGATAAGAATAACTGGAGTGTCAAAAGTATGTTAGCTTCCTGCATCAGTACAAGAATTGGAAGGATATGTTAAACAGTTTGCAAGAGTATTAGGTACAATTTTATTTTGAAAGTTGCAAGAAGCCCTGCTTTGTCATCTAATACAACCACTTCATCATTGTTACATCCCTTCAGAGCGTGTAGAACAAAATGTTTTAATTTCCGTGTCTTCCATACATTACTACTCACGTGTAGCACTAGATGGTGCTAACATTCCATTGGTCTGCAACCATTAACCTTCAGCACTCACAATGTAGACAGTTAAATGATTTTGCATATCCCTAGGGTTGACCGAACTATCTCTAAAGGTTTGTTTTTTTCTCTTCCAGGATTTTGCAGGCTTACACATAAGTTGTGGAATGGGTAATAGGTCTACTTTAATTCAAATTTAACAGTTATAAGATATTAACTTTGTGTGTTTGTGTGTGTGTGTGTGTTTGTGTGTGTGTTTTAATGTAGCTTTTGTTGTTTAGAACCAAGTACAATCTAGCTAAGCCCTAGGAGTTGCTTGGAATCATTAACAACTTTAGAAGGCGAATTTGTGGACACGACCTCGCCTTTCTAAAAGGCAGGCCATGATGTTTTTATTGTGATTTCATTGTCTCCTCTAAAAGCTTTTTATTTTAATTGCCTAATACTTTTAGTTATCATTATCAAACATGTCTTGTTCTTTCTGAAAACCAACAGTGCACCATCATGCTAAACGCAAAACGCCGAGTTGAGAATGCATAGCACATACATACATGATGGGCTGTTTCACATTTCTTTGTGTCTTTTAAATTTAGAGCTTAAGTCTACTGGTTTTATCAAATCATTTGGTTCAAATTTTAATATAAGAATTAAATGAATTAATGTCCATTTTTCTGTGCTTGGCTCTAAGAAGCCTTGTGGGAAGCATGCTTGCTTATCAGTTTCTTTCTTGGTATTGGAAACACGCTCTGCTGGGTGTCACTCAGAAGACAAATGCTCTTTCATCAGGGTTATCAGGAGTCCAGCTGTTAAAAAGTACCTGTACCTCCAATTCAATTGGTATCCAGTGTTGTACACAGAAACTTCATGGCTTTTATTTGCTCATTTTCCCCAAAATTTTCTTTCCCCCAAATCACACAACCCTGCATTTGTCTCCTCAGCATAGGTCTCCTCTTCTCAGCATAGATTTTTAGAGGCTAGGAATAAAACATGATTTTTTTTTCTTTTGCTACTGGTGCAGTATTTTGTAAATCATAAAAGGTTTCCTGTCTTCTACATTGCTTTGACATCTCTCTTGAAACTGTAATTGGAAATGGAAATGTTACCAAGAAGTAGAAGTTGGAATTGCTGTTAGTTAGCGATAAAAGAAACATAAAACTGTAACTGTGGGGTGAGGGGTGGGGAATACAGAGGAGAGGGGATTGGGATCAGCCTTTGATTTCTGAATCTGAGAAGTTCATACCAATTAAGTCTATGTCTTCAAAGTTTATCTTATTGTGTTGTTAGTGATGTACTACTGAGTTGTATCAAATAGTATGGAACTGGAAATATAAGGCACCTAACAACTCCTGTGGATGGTAAGATGTACATTCAGCTTAGGGTGTTTAAATTACAAAATGGAAAAGGCCTGACACTTGACCACATCTTTCCTCCTGACCAAGTGCCACCAAGTGATGCCACCAAGTGGCACCAAGTGATGGCAACCATCAGGTGAAAAGCAGAACCAGCGTGTTTATAAACAGGAGTTCAAATGGAGGGTCTGCAAAGTCTGAGGCTGTAATAGTTTATGCAGAGGCGTGTCTTTATAGGTACATTGTGGTCTTCATGCAGCTGAACCTGCAGAGTTGGCTTCTTTCCCCCACTTCTAGAACATATGACCATTCTGAGAAAACCGTGAACTATCTGGCCATTTCCATCAGGCATGTTTGCAGTATGTACATGTTGGTAGGGGCACGGAACACAGGCGCAGTCTCTCTTTCATCTGTTTTTTTTTGTGTTTTAGATACAGATTCTTCTTAAAATATGACAGCATTGTTTGTTATTTTCAGAGGTCGACAAGATTTACTCAGACCCCACTACTCATTTAGCAGATGTTGCTAGTTTTCTAACAATAACCTAATTTTGTGAACTAGTATATTGAACTTTACCCATGAAAACATTAACACAGATGTTCATTTAAGTTCTAAGGCAGGTGTGTTAATGAGGAACCATGGAAAGTGAAACTTTTTATATTTCCATACTGGAAAAATCCTTGGTGCATGCATACTGTTGTATAAACCTATTCACCCAAATCAAATTTACCTTCACATTTACTCTGCACCCAAGTGAGTGAAAATGCCACCCAGGCTACATCAAACCACAGCATTTATAATTTCTGCTGCACTCAGAGAGTGATATAAAGCTTGACTTTTATGAAATACCATGAAACAAAACATGCTACTCAAGGCATGCTTACATCATCCACTCAGATGCACGTTAATGGCAACACTGGTTCTGCTGCTGGTGGGTAACTGTAGTTAACAGTTTAAAATTCTGAAGGAACTTCTCAGCCCATAAAGGTTTTATGAGCTGAAAAATGCTGTGGGGTGTGGTTAACAGTGGTTCAGGGATGCTGAAACCTTGACTCGTCTATTGCAGGAGTAGTTTGCACACCTGCACTTGGGGAAATTATTAGAAGGCTTTCTTTGTGAACATGTCTGAAGTCTGTAGAATTTGACTAAGACAGAGCCTTTGTCAGGTTAATATGTACTATGCCAGCTTTGAGTGGAAAGAAATTGCCTGCTTTATTCTTTCTTTACTGAAACTGTAGTCAATGGTTAGATTTTTGGCAAGTATTTTGTTTGTCACAAGTCTTACTATGATGGAAAGAAAATGGAATTAAATATCTGTGACTTAGGTGATCTGTCAAAGAACTAGGGATAATTAACATTGAATCCAAAGTAGTATTGATAACTGGGCACTATATTTTTAGTCTCTTAGAATTGCATACTTGAGCTATCTGCTATACCTTTGTTAAGTTTTGTCTGCAAATCCGGAAACTAAAAGTGATCCATTAATGACATAAGAATTTTTTTCTTTGTATTGATTGAGTAAATTCCTTCAATTAATTTGTATTTGAAGAAAAAAATACAATTTTTATTGCCTTCATAGAAGCATACATATTTTTTACAGTCAGTGAATGATTAAAAAATATTGAGACCATGGCTGCACATTCATGATGTATCACCAGTATCTAGATTTACATGACCACAAAATTCTCTACTATTTGAGATTTTTTTTTGTATGATTCATGTGCCCCTGTCTTTGTGCTATAGTTACCACCAAACACTCACTATTTCTTTAGTTAGAGATATAAATCTTTCAAAGATACTTCAGCACAGTGACAACCTTTTGATTCTTAATACTAAATCAGTAGGAAGATATTGCAACTCTCAAAGGGGAGACTAAATGGGTAGAATATTCAGTGTTTACAGGATATTATCCTATACTTGCAAGATCACTTTAATGCTGGAAAACAGACCTGAGAAACGTGAGATGAGAGAGTAAAGATCTGTGATGGCAGAAGCCTGTAATGGGCACTTTGGAAGCTGAGTCAGGAGGATGGCAAAAACAAGTACATGCATAATAACAAATTATTTAATGTGAGTCCTAGGCCCCAGATGTAAAAACACAGCCATTTTCTCTGTGAGAGTGGCATCTGTCTATCTAGCATTTATCTATCTGAACTGAGACTTCATAAATAGAAGGGCGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAAATTAAGATGCTATCATTTTGAAGCATGCTGAACCAGGAATGAGGTATTGAACTAGGATTCTAGAATTGCAGCCCCATCATGTACAGTACAGAGATGTCAGCAGAGAAAGGAAGGAGCGGAGTGATTGTGGGCCAGTAGGTAGGGCTGTTTGAACAACCCATTAAAGGAGTCTATTTGAAGAGAAGCAAGGTTAACGTTTGACAAAGGAATGGCAAAATAGAGTTGTTTCTACTCTGTAGCTTAGTGGATATAATTTTAGAAGAAGTTATAAACTTACTTATTAGAGTCCTTCACTATATTGTAATCAAAGACTTCCTTACTTTTAAGTTATCAATTTTAAAATATCTGATAATATCTGTCTGTTTATCTGTATCTATATCTATGTGTATGTATGTACATCAAAGGACTCAAGTGCTAGAGAACTAAAGCAAAATGGATAGCAATGTTCAACTTTATGGTTAGCCTTTATTTGGTCAATTCAAAAAGTTATATGTATGAGTGCTTTGCCTGAATGTATGTCTGTGCTCCACTTGCATGCCTGGTACCTACAGAGGCCAGAGAGAGTGTTGAATCCCCTGCAACTGGAGTTATAGTCAGTAGTCAGTTTTGGAACTGCTGTGTAGGTCCTAGGACTCTAACCCCGATCCTACGGAAGAACAGCCAGAATTTTAATCTACTGAATGATCTCTCCAGCCCATATTTGCTGTATTATTTTTTAGAAATAAATTTTTAGAGAATTCCACAGAATGTATTTGGATTATACTTGCCCTAACTCTGCTCAGATCCACTTTGGATACCCAACCCACCCAATTGCATGCCATCTTTTTACTTTTTAAATTCATGTATTTGTGCTGCTCCAATGTCCTTTGAGTTTAGAGCTGTCTTTCGGATCATGGTCAGCCTAGCAGGAAGATTAGTTCAGGAAGCATTTTGAAGTCCAATTGCCCAAATTGCTTGTTTTGAGTGTAGTTCTTTCTTACTACTTAGGCACTCATCAAGTATCTGTAATTGCTTGAATATGCTGTGTAGGAAATCAGGTGCTCTGTTAAAAGGGAGTAGAATCTTTTGTGAAGAAGAGTTTATACTTGGTGATGTCTCCTTAACTCGGGCAAGATGACTGCATCTAACAATAGCCTTTGCACTTGAGGGAACTATGTTATCCGAGAATAACTGGGAGCTAAGAAAACCCATGCCTATTTACTATAACCTACCCACCTCTTCAATGTGAGGTCAGCAGAAGCAGCCTCCTTACTTACATATGTGTATGAGCCATTCTGGATGTGAAGTTTGTGAACTGAGAAAAAAGGTGTGCGTTGCTGAGCATACAAAGGCAGTCAGGGGGACACAACTTGCTTGAGAGCTGCTCCAGGTAAGCTATGGTTAGCCAAGTCAGAAGGAGGCAACAAGGATCACAGAACACAGTGATCTCTAGTTCTTTGATCTTGTTCACTTCTCTGGTGTTTGGGAAGGCTGTTTTGTAGATATAAGCATCGCATACTACACAAGAACTGAGGGAACGAAGGATCAAAAGCATCTGGCAACATTTTGGAAGGCATTTGTATCCTGATTTGTCATGTTGTTGTTGTTTAAAAAACTAAGCTGGGGCAAACTATGTCACAAATTTTAAAAAATACAGAGGATTCAGAATATTTTAAGCAATTTGATTAAAAAATCACATGTGTTTCTTTCCCCCCTTAAAGTACTACTTAGTCAATTTATTTCAATTAAGAATTGAGGATCTAACAGGATTCTGTCCTGCTTAAGTCTCTATCCTAACATATAAGCAGTGATATTGAAATATAAGACAATTAAATTCTTTTCTACAGACACACACACACACACACACACAGAATTGAGGATCTACATATACATGAAATCTTGACATTATGAGTATGTTCAGGCTTCTTCACTTTAAGATTTACAATTACCTACCAGGGATCTGCAGTGTGGCTATTTCATTTTCGCAATAAGGCTCTTGATAGATTTTCTATATATATATATTAGAAAAATTACATTTTAAAGAAAACATAGTCTTATTTGTCTTCACTGAGTAGGCTGCAATATCTTTCACTTAATTAAAGACTCTTAAGCTTAAATTATAAATATAAATATGTACTGTGACCAGTCGCTAGGCATGATAGCAACTATGTTTGTGTCTGGTTACAGAATGACTGCAAGACTTGTGCTATGTCTGCAAAATTCTGCTATGAAGTACTTAAAAATACTCTGTGAATAGTTGAAGGTCAGTTATCCATAAAGCCTGTGTGAAATGCCATTAAAAAAATCCATTAACCATGGTACTAGTATATTCAAGTCAAGCTGTTAAAATACACCCATATAAACATAGAAAAGATTGTGCATGCAGTCTACAGAGTTCTGTGGTTTGACTCTTGAGATCTAAATAAAAGTTATATTCTCCTTAGAGTAAAATTCTGAAATAAAGCACTCTTTTAAAAAAGCCCATTCTTTTATGAGCTTGGACTGTCAGTAACCCTGTTAAGTCTTTCTTGTTAGTGTGAAATAGAGCAGATCACTATTTTGCAATGAAACGGGACTTTGACAATAGTACAGGTGTCCCCCCCCACCATATGCCACAAAGAAACTTTTCTAGTTTGCCATAATTATAGCTGTTCAGAATCTTTCAGAACATGTGTGGTAAGTGGGGGTGGTGACAGGAAAGGGGGAGGCAGAGGCAATTTTGGAAAATGAATAAACAAAAACGGCTGAGTAGGATTTGATGATTTGTAAGGAATTATTGATGGTAATTCAGGCCATGTGGCCAAGAAGAATTCACCTACTTATGTGTACTGTAGATAGAGTTTTCTATAAACTCTGTCCTCATTCATGAAATGTTGAAAGTATGGAAAAAATTATATATATAGGGACAGAATAAAGTGTGAAAAAATATGAAAATTGAAAACCCTAGGTAGTTAACATTTTTCCATTCTCAAACCAAAGTTAAGAAATTCAAGGAAAGCATTTGTAAGTTGACACAACCTGAACAAATAGCCACTTGGGGATATTCCTTTCAGAAAAGGTAAATAACAGCTCTTACTCTCATTCTGCATTTTGTGTTTGCTCTAGTTAAGTCTTTTTTAGTAGGAAAATTCTAGGACTCCATATAACACAAAGATTGTGGTTTCATATTGTATTAGAACTTTTTGTCAAATAAATACATTTTAGATACTCTTGTCACATAGAAACACTACATGGCCTACTATATGTGTATTTGTTTTTGTATGCTAATCACCCTATTATCCATAAATATATACTAAACCTAACATATATCCACTGAGTCCAGCTGACAAGAAAAAAATTACAGTATTTATCAAGTGGTAACATTATGCATTAATGAAGCAAAACAAAATGAAACCCATGAGAATGTTAGTCATTTAAGCCAGGTTCATTTGGCCCTCTAGTTAAATTTTCATGAATGTGTGCAGATGTTATAATTTAACCTGGACTTATTTAACTATATTTAAATAGTACTGATGAGAAGCTGCTTGTTTTAGTGATAAAATTGTTGCTATTATATTCCAACAGTTTATATGCAAAGGCATTTTAATGTGGCCTTTCTATGCTTTGTACATTGTCTTTACATTCCTTTTTATAAGACAAAGTATACCTTTGTACAAACTATCTGAAATTTTAATTGTGTCTTCTTTTATAACTTACAAATGGTTACTATACGATAACAGTAACAGCTAATATTGGACAGACATCATTCATTTTAATGATGCTTCTATAAAAGTCTAGGTATTTAATCATTTTCTTAACTTACTGTTAAGGATTAGTTGCAACATTTATGCCAGAAGCAGCATGTAATTGTTTTGTGCTTTGATGTGTACTGGAATTAGGCATGTATCTAACTTCTCTTTGTGACTGAAATATTTTTTTAATCATTTAAGTATCCATATGCTTTAGCTTGGATGAATGAAATCCAAGTGAATACATTAGAATGGATGAAAGTGTGTGTAAAATGTGTCTAGTGTGAAGGTTAAATAGAAAGTTATAGTTAGGTTGAAAAAATAGACACCCAATATTTTAGTAAAATGATTCAGTGGGTATATCCTGGCATATAGACAGTATGTTTTTTTTTTTTTTTTTTTTTTTTAGTTATTAGGGTGAAAGAGAAGGTGGAATTACCGTATGTGTCTCCTGAAGTCATGTTTGTTGGCTTTCAACATAAAAAGTCAACACACATCCACAGAGTAGTTCAGTAAATATTACATTAATGTACAGTGGACTGGGAAAAAGCAAGATCATACAAACCGTCCTCAACTACTAATTTTCTCTGTTCTTATTGGATGTTGAATGTTGATGCCTTCCAATGAGGAAAGAAGCAGCTTATAAGAGGAACAATCTAGCAGAAAACATTTTTGGAGATGGGGTAATGGAGGCAGAGTTGTCTTTGTCATGCTAGTTTCTTCTGTGTGTTTATCAGACTCATCCTAAACTTGTGTGTCAGTTAGGGCTAAACAGAAAGCTTATTCTACAATAGCATTCCTCTGGGCAAGTTGTGAGGCCCAATGTAGCCTGTGTCTAGTCCATGACCTGGTATTTCCAAAAGCACTGTGGTGACAGTGGAAGTAGTGTAGCTGGACTCCATCAAGGATAGCCGAATGCATTCTGGAATGGGTGAAGCCTCAAGTTTTCTTTTTCTAGAACACTAGACTGAAAGTTTTGCTGGTGTATTTCTGGCAACAGAGAAGTAAACGGGGCATAGTGTTTGCTGCCATTTGGCATTACAACCCAGAGGATGGGTTTATATGTATTACTTGACATTTGTAATTAGAATACTTACATACAACATCAGGATTGTCATTCATTAAAATGTCAATAGCAAGAAATAAAGCTCAGCCTGGTCCTGGCACAGATCATAAAAGACAATGACATAAAGGAGAAAAAGGCTTCCTCTGGTCTTTTCAAGAAGATCTTTCCCAGCCCCCTCCACCACTGGATATATTTGGTCTAGGGAGTCATTTTTTGATGTCGAGAGATTCCTTCGTTATTGATTCAGTGAATACATGTGGCCATTACATCATAAATTGGGACAGAAACAAACTACTTTTCTAAGAATTGACCCTTAAGGCAGATAATAGAGGCCAGGAGGAATTTTATGTCTTTTCTTATTGATAGAATTCATATTTAATGTATGGAACAATAACCCATTTTTTAAAAATTTATGGTCTGGTGAAATGGTCTTGATTTCAACTTTTTTTGCAGCTCACAGCATCATCAATTGTGCATTCTATAACTAAAATGTCTATATAATTTCTTTTTCATTTGAGAACTCTGTTGTCATCTTAAGCACATTTAAGTGTTTTTCTAAATTGTTTCCACACTCACAAAATGGAATTTTTCTTCTTATTGTAATTACATAACAGCAAACTTGAAGAGCAAGAACCATTTGCAGAAAGGTGATTTCATGTAACTTGTAACAAGTCAAATCCTCTTTGTGTGTATGAGTGTGATCAGCCTTGTCTTCTGTACCCTGCCAAATCTTCCATTTAAGTATTGTGAAAACTCTTTGTTTTTTTCAG
Seq C2 exon
GTCGATTGAGTGATATGATTGTAAGTGGTCATCCAATAGATTCAGAATCTAAAGAAGAGGAACCTTGCAGTGAAGAAACAGATCCACTGCATGATCTGTTTGCTGAAATTTTACCCGAGTTACCAGACTCATTTGAAATAGACATATATCACAGTGAGGAAGATGAAGACGGAGAGGAGGACTGTGTAAATGCAACGGATGTAACAACTACTCCGTCAGTGCAGTATATCAATGGGAAGCAGCTCGTTACCACAGTGCCTAAGGACCCGGAAGCTGCAGAAGCTAGGCGTGGCCAGTACGAAAGTGTTGCACCTTCTCAGAATTTCCCAGATAGTTCTGCAACTGACACCCATCAGTTTATACTAGCAGAAACAGAATCGTCAACTACCATGCAATTTAAGAAATCTAAAGAAGGCACGGAATTGTTAGAAATCACATGGAAACCCGAGACCTACCCTGAAACACCAGACCATGTTTCAAGTGGTGAGCCTGATGTTTTCCCTACTCTCTCATCCCATGATGGTAAAACCACCAGATGGTCAGAGTCCATCACAGAGAGCAGTCCAAACCTTGAAAATCCAGTGCACAAACAACCTAAGCCTGTCCCTCTGTTTCCTGAAGAGTCTTCAGGAGAGGGTGCCATTGAACAAGCATCCCAGGAAACAATCTTATCTAGGGCTACAGAAGTAGCACTTGGTAAAGAGACAGACCAAAGTCCTACCTTATCTACCTCTAGCATACTTTCAAGTTCTGTGTCAGTAAATGTCTTGGAGGAAGAACCACTTACTCTAACAGGAATCTCACAGACTGATGAATCCATGTCTACTATAGAAAGCTGGGTAGAGATAACACCTAGCCAAACTGTAAAGTTCTCGGAGAGTTCTTCAGCTCCTATCATTGAAGGGTCTGGGGAAGTAGAAGAAAATAAAAATAAAATCTTTAACATGGTAACTGATTTACCACAGAGAGATCCTACAGATACACTCAGCCCTTTGGATATGAGCAAGATAATGATCACAAACCATCACATTTATATTCCTGCAACCACCGCTCCTTTGGATTCAAAACTACCTTCTCCAGATGCAAGGCCTACACAGTTTGGAATTCAAACAGCCACCTCTGAGTGGGTTTCCGATAAGTCTTTTGAAGGAAGAAAAAGAGAAGAAGATGAAGAGGGAGCTGTGAATGCAGCCCACCAAGGAGAAGTTCGAGCAGCAACAGAGAGGTCAGATCACTTACTTTTAACACCAGAATTAGAAAGTTCAAATGTAGATGCATCTAGTGATTTGGCTACCTGGGAAGGTTTTATTCTAGAGACAACACCCACAGAGTCTGAAAAGGAAATGGCAAATTCAACTCCTGTTTTTAGAGAAACAATTGGTGTAGCCAATGTGGAGGCACAGCCCTTTGAGCATAGCAGTAGTAGTCATCCCAGGGTTCAGGAAGAGCTGACCACTCTCTCAGGAAATCCCCCCTCTCTTTTTACGGACCTGGGCTCAGGAGATGCTAGTACTGGTATGGAACTCATCACTGCTTCTTTATTTACATTAGATTTAGAGTCTGAAACCAAAGTCAAAAAGGAATTACCCAGTACTCCGTCTCCCAGTGTGGAGATATCATCCTCTTTTGAGCCAACAGGATTAACCCCGAGTACTGTACTAGACATAGAAATTGCTGGAGTTATGAGCCAGACATCGCAGAAGACACTGATTTCTGAAATATCAGGAAAGCCAACTTCCCAGTCAGGAGTAAGGGATTTGTATACAGGCTTTCCAATGGGAGAAGATTTTAGTGGTGACTTCAGTGAATATCCAACAGTGTCTTATCCAACGATGAAAGAGGAAACAGTTGGGATGGGAGGTTCTGACGATGAACGAGTTAGGGATACACAGACTTCATCATCTATACCGACTACCTCAGACAACATCTACCCCGTGCCTGACTCAAAAGGACCTGACAGTACTGTGGCCAGCACCACAGCCTTCCCCTGGGAAGAGGTCATGTCCTCAGCTGAGGGGTCAGGTGAGCAATTAGCCTCAGTCAGGAGCTCTGTTGGTCCAGTGCTTCCACTAGCTGTGGACATTTTTTCTGGAACAGAGTCTCCATATTTTGATGAAGAGTTTGAAGAAGTGGCTGCAGTGACAGAAGCAAATGAAAGACCCACTGTTTTGCCAACAGCAGCAAGTGGAAATACTGTAGATCTTACAGAAAATGGGTACATAGAGGTAAATAGCACGATGTCACTGGACTTTCCCCAGACAATGGAGCCATCCAAATTGTGGTCTAAACCAGAAGTCAATCTTGATAAACAAGAGATTGGAAGAGAAACAGTGACAAAGGAAAAAGCTCAGGGACAAAAGACTTTTGAATCGCTCCACAGTTCTTTTGCACCAGAACAAACCATTTTGGAAACCCAATCACTTATTGAAACTGAATTCCAAACTTCCGATTACTCTATGTTAACAACACTGAAAACGTACATTACTAATAAGGAAGTGGAGGAGGAAGGTATGTCCATAGCGCATATGTCTACTCCAGGTCCAGGGATCAAAGACTTGGAATCATATACTACCCATCCCGAAGCTCCTGGAAAGTCACACTCTTTCTCAGCTACTGCTTTAGTGACTGAATCTGGAGCAGCTAGAAGTGTACTCATGGATTCCTCAACTCAAGAGGAAGAAAGCATAAAACTCTTCCAAAAGGGTGTGAAACTAACAAATAAAGAGTCAAATGCTGATCTCTCATTCTCTGGACTGGGATCAGGAGAGGCTTTGCCTCCTCTACCTACAACATCAGTGAATTTGACTGACATGAAGCAGATCATTAGCACATTGTATGCTGAGACATCTCACATGGAAAGCTTAGGAACAAGCATCTTAGGTGATAAAATGGAAGACCATGAAAGAATGGAAGATGTGTCCAATGAAGTTAGAATGCTCATTTCCAAAACAGGCAGCATCTCTCAAGACAGCACAGAGGCACTCGACACAACTTTGAGTCATACCGGAACAGAAGAACCTACAACTTCAACTCTTCCTTTCGTGAAGCTCATGGACTTGGAACGTTCTCCAAAGCAGACCCTCAGGTGGGAAGAGGAAACCCAGACCCATAGACCACAAACTATGAGTGGACTGATCTCTAATGAAAATTCTTCAGCATCAGAAGCTGAAGAAGCAGCAACTTCCCCCACTGCTTTTCTGCCTCAAACTTACAGTGTTGAAATGACCAAACACTTTGCTCCATCAGAGTCACAACCATCCGACTTGTTTAATGTAAACTCTGGAGAGGGATCTGGAGAAGTGGATACTCTTGACTTAGTGTACACTTCTGGAACTACTCAGGCAAGCAGTCAAGGAGACAGCATGCTTGCTTCTCATGGATTTCTGGAAAAACATCCAGAGGTGTCAAAGACTGAGGCTGGAGCTACTGATGTATCTCCAACAGCCTCAGCAATGTTCCTGCATCACTCAGAGTACAAGAGTTCTCTGTATCCAACCAGCACACTGCCAAGCACAGAGCCATATAAAAGTCCCTCAGAAGGTATTGAAGATGGTTTGCAAGACAATATCCAATTTGAAGGTTCTACCTTGAAACCTAGCAGAAGAAAAACCACTGAAAGCATTATTATAGATCTAGACAAAGAGGATAGTAAGGACCTAGGATTGACAATTACTGAGAGTGCTATTGTTGAAATTCTCCCTGAGCTGACATCAGATAAAAATATTATTATAGACATTGATCACACTAAACCTGTATATGAGTACATCCCTGGAATACAAACAGACCTAGATCCAGAGATAAAATTGGAATCACATGGCAGTAGTGAAGAAAGCCTTCAAGTTCAAGAGAAGTATGAGGGAGCTGTTACCCTTTCTCCAACTGAGGAATCATTTGAAGGCTCTGGTGATGCGCTTCTTGCTGGCTATACTCAAGCAATATACAATGAGTCTGTGACTCCCAACGATGGAAAGCAGGCAGAGGACATAAGCTTTAGTTTTGCCACTGGGATCCCAGTTTCTAGCACAGAGACAGAATTACACACTTTCTTCCCCACAGCGTCAACCCTGCACATTCCTAGTAAACTAACCACAGCTAGTCCGGAGATTGATAAACCCAACATTGAAGCAATATCTCTGGATGATATATTTGAATCAAGCACCTTGTCTGATGGCCAAGCTATTGCAGACCAGAGTGAAGTAATATCAACATTAGGGCATTTGGAAAAAACACAGGAAGAATATGAAGAAAAGAAATATGGAGGTCCTTCATTTCAGCCAGAATTCTTTTCAGGAGTGGGGGAAGTATTGACAGATCCCCCTGCTTATGTAAGTATTGGTAGTACATACCTTATAGCTCAGACTTTAACAGAATTACCCAATGTGGTAAGACCATCTGACTCCACACATTACACTGAAGCAACACCTGAAGTTTCCTCTCTGGCAGAGCTCTCTCCACAGATACCATCTTCTCCCTTCCCTGTCTACGTAGACAATGGAGTCTCTAAATTCCCAGAGGTTCCCCATACAAGTGCTCAGCCAGTTTCTACTGTCACCTCATCACAAAAGTCTATAGAGAGTCCTTTTAAGGAAGTCCATGCTAATATTGAAGAAACCATCAAGCCATTGGGTGGAAATGTCCACAGAACAGAGCCTCCATCCATGTCTCGTGACCCTGCTTTAGATGTTTCAGAAGATGAAAGTAAGCATAAGTTACTAGAAGAACTGGAAACGTCTCCCACCAAACCTGAGACTTCCCAAGACTTCCCAAACAAAGCAAAGGATCACATTCCAGGAGAAACAGTTGGGATGCTTGCTGGTATCAGAACAACAGAGAGCGAACCTGTCATTACTGCAGACGACATGGAGCTAGGAGGTGCCACACAGCAGCCACATTCTGCTTCTGCAGCTTTCAGAGTTGAGACAGGTATGGTACCTCAGCCCATCCAACAGGAGCCTGAGAGGCCAACCTTTCCTTCCTTGGAAATTAACCATGAAACACACACATCATTATTTGGAGAATCTATACTGGCAACATCTGAAAAACAAGTGTCTCAAAAAATTCTTGATAATAGTAACCAGGCAACAGTCAGTAGTACTCTGGATCTACATACTGCACATGCATTATCACCATTTTCCATTCTGGACAATTCTAATGAAACTGCTTTCCTGATTGGCATTAGTGAAGAGTCCGTGGAAGGCACAGCAGTTTACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021614:ENSMUST00000109546:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=NA C2=0.747
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types