MmuINT1035776 @ mm10
Intron Retention
Gene
ENSMUSG00000024298 | Zfp871
Description
zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]
Coordinates
chr17:32777157-32777527:-
Coord C1 exon
chr17:32777401-32777527
Coord A exon
chr17:32777218-32777400
Coord C2 exon
chr17:32777157-32777217
Length
183 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CGACTTTAATTGTATTTTAGGGA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GAGTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCTCCCTGGAGGAGTGGGCTATGTTGAATCCATCCCAGAAGAACCTCTACAAAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAG
Seq A exon
GTAAGTATGCCATCATCCCTTTAATCGGTGAAAGAAAGCATGCTTCTAGATGAGTTTAAATATGGTAAAGAGGTTTGAATGACTACTTGAGATCCACCTTATACTGCAAATTTTGCTATAATCTATTAATGTATTTACTATGATGTCATAATTTATAATGATTCGACTTTAATTGTATTTTAG
Seq C2 exon
GGAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024298:ENSMUST00000159086:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTGGCCTTTGAGGATG
R:
TCCAGGAGTTTCGGTATATATTTTCA
Band lengths:
178-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types