MmuEX0053678 @ mm10
Exon Skipping
Gene
ENSMUSG00000024298 | Zfp871
Description
zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]
Coordinates
chr17:32777157-32788287:-
Coord C1 exon
chr17:32788138-32788287
Coord A exon
chr17:32777401-32777527
Coord C2 exon
chr17:32777157-32777217
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGTATGGGCTCTTTCAGGAG
3' ss Score
7.29
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AGCGGAGGATGCCACTTCCCGTCCAGCCATTTTAGGCGTTTGTGTCTTCTGTGGAGAGAGACCCGCAGGTTGTTTTCCCCAGTGTCTGTGTTCCATCCACTTACTGCAAGAGCTGCCGGAGAACAGCAGGACACCCGGTGATTGGAAATG
Seq A exon
GAGTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCTCCCTGGAGGAGTGGGCTATGTTGAATCCATCCCAGAAGAACCTCTACAAAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAG
Seq C2 exon
GGAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024298_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSMUST00000159086fB4718
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGGATGCCACTTCC
R:
TTCCAGGAGTTTCGGTATATATTTTC
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types