MmuINT1035813 @ mm10
Intron Retention
Gene
ENSMUSG00000056300 | Zfp981
Description
zinc finger protein 981 [Source:MGI Symbol;Acc:MGI:3700965]
Coordinates
chr4:146532070-146535547:+
Coord C1 exon
chr4:146532070-146532153
Coord A exon
chr4:146532154-146535420
Coord C2 exon
chr4:146535421-146535547
Length
3267 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TAAGAAGTTTTCTGTTACAGGAT
3' ss Score
6.53
Exon sequences
Seq C1 exon
AAGAATTTGAATGTTTGCTCCTCACCAAGAATCTGGGAGAAGAACAACTAAAGAATGAGTGCCTCTCTGGTAAACCCTCCACAG
Seq A exon
GTCAGTATCCTATCTTCATATCTTTTCAAAATCCCTTTTATATTAAGAACATTCAAAAGTCTTATTATCTGTATATTGAATATTATCTAAGGGGATTATTTTCTATGCTCTTCATTTTCTCGTGTGATAATGAAAATTTAAGTATTTGGTTTCTCACATATATAATAGCTTTATATTTTCACTGGTTTTTATACTGTGAAGACATATAATTACGATCAAACTGCATGTCTCAAAGAGCATCTATTGGAAATGATGCTCAAAAAATATATTGATGACTATTTCCTATGTTGGATAAAGTAATATTAGTCTGGAAGTAAAGTCTCTTGTCCCACATAAATTGCAATACAGGAATGGTCAGATTTTCAGACACAGCTTATGAATGTGGATATGTAAATATGTAGAAACTCACATCACTAAGCAATATATGGAAGAGTAGAATTTGTAGTCACATAAAATTATATGAGGCCCACCGTCTTGAATTTTTCTTTTCCTTTTTTTTTTTTTCAAGACAGGGGTTTTCTGTATTGCCCTGGCTGTCCTGGAACTCACTCCATAGACCAGGCTGGCCTCGTACTCAGAGATCTGCCTGCCTCTGCCTCCCGAGCGCTGGGATTAAAGGCCTCCGCCACCAAGTCCGGCTGTCTTGAATCTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTACATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTCATTACAGATGGTTATGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCATTGAATCTTAATAGTAAATGAATTAGCTCCCTAGAAACACAGATGATGGAAGAAAATTGTCTTTCTTTTTCCATTGATGTAATTTGAGCTGATGCAGATTTCAGTATTCTGACAATTCTTTTTAACATTTTAAGTCACACAGTAATCATTTTAGTGTTGACATCCAAAATTGGACTCAAGAGAGATGCTGTCCCTGTGACATGTTTATTTTCCTTTTGTTTTTGTACCAGTCCTTAGTAGTGTAGGTCCTGGGGTCTTCACTTTTGTATTTCATCACATGAAATACATTTGAAACATTTATCTAGAGAGGATAGCCTTGGTGCTGTGCATAAACCATCAATTTTCAAGTGTAAGTGAATGTCCTTTCTATTTTTTGTTTCCTTTTCTTTAGAGGGAAGACAAGTTGACATACCCTATGTTATTCCTCTTCAGCCAAGCAATGCATTACATAGGGAAAGCTGAGGGCTGTGGCAATGTTTCTATTTTTTATTGCAATACTATTTTCTGTAGGTATATACATGTTCATCTGGCTGTTTTTATGTGTATAGAATTGCACATTATCTCCCTAAAACATTGAGTTCTGCACCAAACCTTGGAGTCTGAAGTCAGGTATAATAGTGAGCTGCAATATATTTTGTGAGAATTAAATTAGGTTTCTATACAGAAACAGCAAGTACCTTTACATCTTGGTATTTTTTTCATGCCCTAGGTTTATAATTTGAGGCTCATTTGTACAATAGACAGTATATAACCTGTGTATTTTAGTTTTTGATAAACAAAGCAAGAAATGTAAATCATACTTCTCCATGCAATCTCAAATTCTGATACACAAATGGTCAAATTCTGACGAAAAGAAAGTTAAAATTAGGGGATAGAAAATTTCAATTAAGATGATACCATGAGGAATAAATTATTAAATATTCATGAAGTTAGAATAATTCTTCATCAATTTGAAAACACAATTTGAGCAAAGAAAATGATTGTAGTTCATTGGACTGCATTGCCACCTATGACATTTGCTTACACACCCATAACTAATCATTCTTCAGTGACAGGCCATATGGCAGTTATGAAATTGTTATGTTGTGTATTGCTCATGCCAACTTACATAAAGTATGAAGTGATTTTAATGCTCACAAATACTGGTTTTTCTACTTTATGGTTTTGAATATATTTTCCTGAAATAACTTCCCAAAGCATTTGGTTCTCTGTGTCATACAGAATGTTCAGTGCTCTGTTGTTGCAGTTTTATGTTGTTTAACACAAAACCTCTGACATTCAGTCCATCCATTAATTCTGCATTTCATATTCTGATTCTACCTGTTTGCTCTACAAAGGATGTAGCTTTGTAGTTAGGCATCAGATTGTCAAATAGATATGATATACTACAGTCATGGAAGACACAGCTGCACACAGGACTCAGCTAGTCTCCATATTTGATAAAGGTAGATATTGTAAAATTTGAAAACATATTTTTTGTCATCATAATTGATGATCTATGATTCTTTTTTATATCAGCCCATCTTTCATAAATGTACATTATGGCATCTAGACATCAAATGTACATCTTATATTCTGTAAATGTTTACCGATTTTGACATTGTTATATCGTGCATTCTCAGAGAAAGATAAATCTAAAAAAGTCTATGAGTATTATAGAATTTATCTGTTATTAAAGTTAAAGTTTGTTTTTCTTCAATATATGTTAGTTACATTTGCCGGAATGTATGCATATGTGCTATGTACTACTCAGTAGAGATCACTGGATTTTTAAAGGACTGGTTTTAACCATCTACTGTTTAGTGCCATGTGAGTGCTGGGAAACAAATTTCTTTTTTTTTTTAAGATGTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGATGGTTGTGATCCACCATGTGGTTGCTGGGATTTGAACTCCAAACTGTCGGAAGAGCAGTCTGGTGGTGCTCTTACCCACTGAGCCATTTCACCAGCCCAGGAAACAAATTTCATAATAGAGGACTTGAAAAGATATGATACAATCCAAACTGCCCACAAAACTTTTGAACAAGATTATGGTAGCAAACCTTTCATTTGCTGCCACTAAGGTCTCAGTAACCAAAGAAAATTGAAGAATATGAGAGCCTTTTTTAATGCAAGCAGTGCGCTAAATCATTCTATAGATTGTCTGTGGTAACGCAATAATTCATGTCTTCAGACACAACTCCATAAACTTTTAGAATACATTTGTCGATCAATATCTTCTTGCCTCATTTATATCACAAGGTGTATCTTAATTAGTTCATTTTTAACATAAGAAAGCAATTTTGTCCATAGCACCTAAGAAGTTTTCTGTTACAG
Seq C2 exon
GATCTGTTAACCTTCAACGATGTGGCTTTGAACTTTTCATTGGAGGAATGGGAATGTCTCAATTTTGCTCAGAGGACATTGTACATGGAAGTAATGTTGGAGAATTACAACAATGTGTTATTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056300:ENSMUST00000105735:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types