HsaINT0188472 @ hg38
Intron Retention
Gene
ENSG00000180257 | ZNF816
Description
zinc finger protein 816 [Source:HGNC Symbol;Acc:HGNC:26995]
Coordinates
chr19:52952751-52956104:-
Coord C1 exon
chr19:52956027-52956104
Coord A exon
chr19:52952878-52956026
Coord C2 exon
chr19:52952751-52952877
Length
3149 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAACGTGTTTTTTATTTTAGGGA
3' ss Score
9.83
Exon sequences
Seq C1 exon
GATTTCCAAAGACTCATGTTACGTGAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAG
Seq A exon
GTAAGTGATATTCCTTGGTGGATTCTTCTGTCTCTTTCCTTTCTGAAGTGCCAGGTATTGTAGTAGCCAATCTTCTCTGAGTGTGAAGCATTCTACATCACACGTTTGCTCGCACTCACCCGTGTCTTTTCTCAGTCCCTCTCATCTTCACTTAAATTCCATCTCCTATAACCTAGTGACATGAGCTTGGGAAGAGGCTCCACTGGGCATGGTCCTGGGAAGGGCTCACACCAGACATGGATGGAGATGGGGTGTGGGCCCCATGGTGTCAGTGATGTTGGGCAGCAGGGATTGTTCAGGGGCCACATCTGGATGCATGTTTAGCTCTTTGTGGACCAGATCAGAGAAACTGTATATGAAAGTCATACATTAATGTTCACTGGTTAATCTGGTAAATTCTGGAAGAGGAGACAAACTAGGGGAGATATTTTGTGTCTGATTTTGTAATGCATTTGAAGCTACACTAGTGAGTCAATATGTCTCTGACGCCAAACTTTTGTTTTAAGAGACACGGTGTCACTCTGGGGCCCAGTCTGGAGTGCAATGGCACAATTCTAGTTTACAGCAGCCTCGAACTCCTGGGCTTAAGTGGCCCTCCCACCTGAGCTTCCCAAATTGCTGGGATTACAGGTGTGAGACAGCCCAGCAGGACTCTGCACTTTCAATGTCTTAGAATAGAATGGAAAGCGGATATAGATACCAGTAATAGAGTTAGCTTTATTCCATCATTGACTTCAAATTATGAAATCAATATAAATATCTAACTGCAGGGGATTCTTTAAATCATTCTCAGCACTTTGACCCCACAGAGACTTTTTTTTTGTTTTTTGTTTTGTTTTGTTTTTTTTACAGGGACTCTGATGAAGCAAACATTTTAGGTAAAAATGATTATAAGTTTGCTCTGACATAAGAGCACAACTTACGTCGTTAGAGAGGATGGAGCCATTCTTTTTCTACCCATTATTATTAAGTAATTCTTTTATTTTAAACATCACATGATGTATATATGTGTTGTGTAGTAAAAGTCCAAAGAAAAGTGCACTTATGCATCCCCTTTCCTGTCCAGCCTTCCACCCATTCCCATGTCTCAGTGGGGAATCGCTGTTGAGAGTTCTGTGGCAAGTCGGCGCAATCCTTTAGAAATGTATTCATATACCGTTATGAGATTTTAGAAAAAATTATTTGATGAATGGGGTTTTTTTTTTTTTTTTTTGCATGTTTTTTGAGACAGGGCCTCCCCGCCTGGAGTGTAGTGGCACATTGCAACCTCTGGCTCTCAGGTTCAAATGAGTCTTACGCTTCAGCCAACTGAGTAGCTGCATTTACAGATGCGTGCTACACTCCTGGCTAATTGTTGTGTTATTAGTACAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTTTGGCCTCAAGTGATCCTTCCACGTCGGCCTCCCTAAGTGCTGGGATTTCAGGTGTGAGCCCTGCTCCCGGTCTGATGAATGTTTGTTATGATATTTTATCCTGCAAGTTCTGAAAATTTTCATGTTTCCAAGGTAGAAAACAAGATAGCTCACTCTTTTAAATCCTCCTTGGAGCTTTCTCTGAATGAAGACTCATGAGTCCTTGACAGTTTTGTTTCATTTCTTTTTTGTTGTTGTTGTTTGTTTGTTTTTTTTGAGACGGAGTTTCATTCTTGTGGCCCAGGCTGGAGTGCAGTGGCACGATATCGGCTCACTGCAACTTCCACCTCCCAGGTTCAGTAGCTGGGAATATAGGCATGCGCCACCATTCCCAGCTAACTTTGTATTTTTAGTAGAGACAGAATTTGTCCATGTTCTTCAGGCTGGTGTCAAACTCCTGACTTTAGGTTATCCACCTGCCTGAGCCTCCCAAAGTGCTGGGATTACAGGTGTACCTACTGTGTGCAGCCAATCCCACGGTTTATGTAGAAAATACATTATTTGCAATATATATATACCTTTTTTTTTTTTTTTTTGAGAAAGAGTCTCAGTCTGTTGCTCAGGCAGGATTGCAATGGTGTGACCTTGGCTTACTGCAACCCCTGCTTCCAGAGTTCAGGCGATTTTCCTGTTTCAGCTTCCTGAATAGTTGGGATTACAGGCACCTCCCTACCATGCTCAGCCAATTTTTTTATTTTTAGTAGATACGGAGTTTTGCCATGTTGGAGAGGTTGGTCTCTAACTCCTGACCTTAAGTGATCCACCCACCTTGGTCTCCCAAAGTGATGGGATTACAGGTGTGAGCCACCATGTCTGGACTTATTTTATATATATATATAAAATATATATTATATATATTTAATATCTTTATTTAATAATATATTTATTATACAATATTATATATAATATATGATACAATATTGTAATATATATTATATATAATATTGTATCATATATATTTTATAAATACATATTATATATAATATTGTATTATATATTATATTTTATAAATACATATTATATATAATATTGTATTATATATTATATATTATAAATATATATTATATATAATTAAATATTAAAATATATATTATATATTTATATATAATATATATAAGTATATATTATATATATAAAACATATGTGTATGTGTGTATATATATATTTTTTTTCTTTTTTTTTTTGAGATGGAGTCCTACTCTGCAGCCCAAGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACATTCGTCTCTTGTTCTCAAGTTATTCTCGTGCATCAGCCTCCCAGGTAGCTGGGACTAGAGGCGTGTGCCACCACACCTGGTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTACACCATATTGTCCTGGGCTCGAACTCCTGAGCTCAGGAGATCCACCTGCCTTGGTCTCACAAAGTGCTGGGATTTTAGGCATGAGCCACCATTCCTGGCCTTATATTGTCCATAAAACTGAGACTTCCACAGTGACTTAGGGGATTTTAAAAGCTATCATGAAAAAGTACAATAAAATGCAACTATACTGAAAAATTGTTCAAAAATACCTTAACATAAATTTGTCAGAACACAGTCTTGGATCAAATCAATACTTATTTTCTGTTTTCTCATTTCACGTGAGGGCAATAACTCACTCCTCCATAATGTTTTGTTGAAACGTGTTTTTTATTTTAG
Seq C2 exon
GGACGCTTGACTTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180257:ENST00000444460:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139001=GVQW=PD(20.5=18.6)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains