HsaINT0188472 @ hg19
Intron Retention
Gene
ENSG00000180257 | ZNF816
Description
zinc finger protein 816 [Source:HGNC Symbol;Acc:26995]
Coordinates
chr19:53456004-53459357:-
Coord C1 exon
chr19:53459280-53459357
Coord A exon
chr19:53456131-53459279
Coord C2 exon
chr19:53456004-53456130
Length
3149 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAACGTGTTTTTTATTTTAGGGA
3' ss Score
9.83
Exon sequences
Seq C1 exon
GATTTCCAAAGACTCATGTTACGTGAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAG
Seq A exon
GTAAGTGATATTCCTTGGTGGATTCTTCTGTCTCTTTCCTTTCTGAAGTGCCAGGTATTGTAGTAGCCAATCTTCTCTGAGTGTGAAGCATTCTACATCACACGTTTGCTCGCACTCACCCGTGTCTTTTCTCAGTCCCTCTCATCTTCACTTAAATTCCATCTCCTATAACCTAGTGACATGAGCTTGGGAAGAGGCTCCACTGGGCATGGTCCTGGGAAGGGCTCACACCAGACATGGATGGAGATGGGGTGTGGGCCCCATGGTGTCAGTGATGTTGGGCAGCAGGGATTGTTCAGGGGCCACATCTGGATGCATGTTTAGCTCTTTGTGGACCAGATCAGAGAAACTGTATATGAAAGTCATACATTAATGTTCACTGGTTAATCTGGTAAATTCTGGAAGAGGAGACAAACTAGGGGAGATATTTTGTGTCTGATTTTGTAATGCATTTGAAGCTACACTAGTGAGTCAATATGTCTCTGACGCCAAACTTTTGTTTTAAGAGACACGGTGTCACTCTGGGGCCCAGTCTGGAGTGCAATGGCACAATTCTAGTTTACAGCAGCCTCGAACTCCTGGGCTTAAGTGGCCCTCCCACCTGAGCTTCCCAAATTGCTGGGATTACAGGTGTGAGACAGCCCAGCAGGACTCTGCACTTTCAATGTCTTAGAATAGAATGGAAAGCGGATATAGATACCAGTAATAGAGTTAGCTTTATTCCATCATTGACTTCAAATTATGAAATCAATATAAATATCTAACTGCAGGGGATTCTTTAAATCATTCTCAGCACTTTGACCCCACAGAGACTTTTTTTTTGTTTTTTGTTTTGTTTTGTTTTTTTTACAGGGACTCTGATGAAGCAAACATTTTAGGTAAAAATGATTATAAGTTTGCTCTGACATAAGAGCACAACTTACGTCGTTAGAGAGGATGGAGCCATTCTTTTTCTACCCATTATTATTAAGTAATTCTTTTATTTTAAACATCACATGATGTATATATGTGTTGTGTAGTAAAAGTCCAAAGAAAAGTGCACTTATGCATCCCCTTTCCTGTCCAGCCTTCCACCCATTCCCATGTCTCAGTGGGGAATCGCTGTTGAGAGTTCTGTGGCAAGTCGGCGCAATCCTTTAGAAATGTATTCATATACCGTTATGAGATTTTAGAAAAAATTATTTGATGAATGGGGTTTTTTTTTTTTTTTTTTGCATGTTTTTTGAGACAGGGCCTCCCCGCCTGGAGTGTAGTGGCACATTGCAACCTCTGGCTCTCAGGTTCAAATGAGTCTTACGCTTCAGCCAACTGAGTAGCTGCATTTACAGATGCGTGCTACACTCCTGGCTAATTGTTGTGTTATTAGTACAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTTTGGCCTCAAGTGATCCTTCCACGTCGGCCTCCCTAAGTGCTGGGATTTCAGGTGTGAGCCCTGCTCCCGGTCTGATGAATGTTTGTTATGATATTTTATCCTGCAAGTTCTGAAAATTTTCATGTTTCCAAGGTAGAAAACAAGATAGCTCACTCTTTTAAATCCTCCTTGGAGCTTTCTCTGAATGAAGACTCATGAGTCCTTGACAGTTTTGTTTCATTTCTTTTTTGTTGTTGTTGTTTGTTTGTTTTTTTTGAGACGGAGTTTCATTCTTGTGGCCCAGGCTGGAGTGCAGTGGCACGATATCGGCTCACTGCAACTTCCACCTCCCAGGTTCAGTAGCTGGGAATATAGGCATGCGCCACCATTCCCAGCTAACTTTGTATTTTTAGTAGAGACAGAATTTGTCCATGTTCTTCAGGCTGGTGTCAAACTCCTGACTTTAGGTTATCCACCTGCCTGAGCCTCCCAAAGTGCTGGGATTACAGGTGTACCTACTGTGTGCAGCCAATCCCACGGTTTATGTAGAAAATACATTATTTGCAATATATATATACCTTTTTTTTTTTTTTTTTGAGAAAGAGTCTCAGTCTGTTGCTCAGGCAGGATTGCAATGGTGTGACCTTGGCTTACTGCAACCCCTGCTTCCAGAGTTCAGGCGATTTTCCTGTTTCAGCTTCCTGAATAGTTGGGATTACAGGCACCTCCCTACCATGCTCAGCCAATTTTTTTATTTTTAGTAGATACGGAGTTTTGCCATGTTGGAGAGGTTGGTCTCTAACTCCTGACCTTAAGTGATCCACCCACCTTGGTCTCCCAAAGTGATGGGATTACAGGTGTGAGCCACCATGTCTGGACTTATTTTATATATATATATAAAATATATATTATATATATTTAATATCTTTATTTAATAATATATTTATTATACAATATTATATATAATATATGATACAATATTGTAATATATATTATATATAATATTGTATCATATATATTTTATAAATACATATTATATATAATATTGTATTATATATTATATTTTATAAATACATATTATATATAATATTGTATTATATATTATATATTATAAATATATATTATATATAATTAAATATTAAAATATATATTATATATTTATATATAATATATATAAGTATATATTATATATATAAAACATATGTGTATGTGTGTATATATATATTTTTTTTCTTTTTTTTTTTGAGATGGAGTCCTACTCTGCAGCCCAAGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACATTCGTCTCTTGTTCTCAAGTTATTCTCGTGCATCAGCCTCCCAGGTAGCTGGGACTAGAGGCGTGTGCCACCACACCTGGTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTACACCATATTGTCCTGGGCTCGAACTCCTGAGCTCAGGAGATCCACCTGCCTTGGTCTCACAAAGTGCTGGGATTTTAGGCATGAGCCACCATTCCTGGCCTTATATTGTCCATAAAACTGAGACTTCCACAGTGACTTAGGGGATTTTAAAAGCTATCATGAAAAAGTACAATAAAATGCAACTATACTGAAAAATTGTTCAAAAATACCTTAACATAAATTTGTCAGAACACAGTCTTGGATCAAATCAATACTTATTTTCTGTTTTCTCATTTCACGTGAGGGCAATAACTCACTCCTCCATAATGTTTTGTTGAAACGTGTTTTTTATTTTAG
Seq C2 exon
GGACGCTTGACTTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180257-ZNF816:NM_001031665:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF029069=Fe_hyd_lg_C=PU(6.7=19.0)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3),PF029069=Fe_hyd_lg_C=FE(70.0=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)