RnoALTA0001473-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13773400-13775466:+
Coord C1 exon
chr10:13773400-13773572
Coord A exon
chr10:13775338-13775341
Coord C2 exon
chr10:13775342-13775466
Length
4 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCTTTACCTTAACCAATCAGGCA
3' ss Score
4.65
Exon sequences
Seq C1 exon
ACATCCAATACCAGGAGAACTTCTATGCCTGGAGCACCCCAGGCATTGGCAAGTTTGTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTCACCCTGCTCTTCCTCATTGAGACCAACCTGCTGTGGAGACTGAGAACCTTTGTCTGCGCCTTCCGGAGGAGGTGGACTCTG
Seq A exon
GCAG
Seq C2 exon
AATTGCAGAACCGGACATCAGTGCTTCCTGAGGACCAGGATGTAGCTGATGAGAGGAGCCGAGTCCTGGTCCCTAGCTTGGACTCCATGCTTGACACACCGCTGATCATCAATGAGCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-36-41,36-40,36-39-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.7=60.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGAACCTTTGTCTGCGC
R:
TCGGCTCCTCTCATCAGCTAC
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]