RnoALTA0011607-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22390099-22413288:-
Coord C1 exon
chr3:22413245-22413288
Coord A exon
chr3:22390145-22390148
Coord C2 exon
chr3:22390099-22390144
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
ATCTCTCTTTCTTTCCACAGGAA
3' ss Score
13.15
Exon sequences
Seq C1 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq A exon
GAAG
Seq C2 exon
TTCTACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-10-18,10-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
NA
C2:
PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]