RnoEX0027085 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22390695-22394224:-
Coord C1 exon
chr3:22394124-22394224
Coord A exon
chr3:22393748-22393800
Coord C2 exon
chr3:22390695-22390795
Length
53 bp
Sequences
Splice sites
3' ss Seq
TACCCCCTCTTTCTCCACAGTGA
3' ss Score
11.28
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TCCTCTAATTATACCAGCTGTGCCTCATCTCAGTGTTCCTTACTTCCAGGAGACAGGATAAGGTCATCTGGCACATTTGTCCTTCAGAGGGCACTTGTGAG
Seq A exon
TGAGAAAAATTCTCTTGATGGGCTTTCTGACCTGCAGTGAGACTTTCCATTAG
Seq C2 exon
GTTTCAAGTAGGTAAGTATGTCTAATTAAGATAATGATGTTTAAAAATCAGTGGTCATAGTTTGATTCCAAAATTATTGTATGACAACTTCTTGATAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'14-16,'14-15,15-16
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000091747fB4022
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACTTCCAGGAGACAGGA
R:
TGGAATCAAACTATGACCACTGA
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]