RnoEX0027098 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22381123-22413288:-
Coord C1 exon
chr3:22413245-22413288
Coord A exon
chr3:22390099-22390148
Coord C2 exon
chr3:22381123-22381242
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTCTTTCCACAGGAA
3' ss Score
13.15
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq A exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAG
Seq C2 exon
CCTCTCAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX1-4/6=1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
PF0345613=uDENN=FE(26.2=100)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(11.0=22.0)
Main Skipping Isoform:
ENSRNOT00000091747fB4026
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAATTCCCGGAG
R:
TTGGCTCCTGAAGATAAGCGG
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]