HsaEX0019095 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123757703-123792630:-
Coord C1 exon
chr9:123792587-123792630
Coord A exon
chr9:123769514-123769563
Coord C2 exon
chr9:123757703-123757822
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTCTCTCCACAGGAA
3' ss Score
14.04
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq A exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAG
Seq C2 exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX3-4/11=3-6
Average complexity
S
Mappability confidence:
89%=100=89%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(21.1=53.3)
A:
PF0345613=uDENN=FE(26.2=100)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(13.0=22.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAATTCCCGGAG
R:
TTCGCTCCTGAAGATAAGCGG
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development