GgaEX0001245 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9862861-9883191:-
Coord C1 exon
chr17:9883148-9883191
Coord A exon
chr17:9866407-9866456
Coord C2 exon
chr17:9862861-9862980
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCTTTCCACAGGAA
3' ss Score
13.89
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATCCTGAGGTGCGGAGGCAATTCCCAGAGGACTACAGTGACCAG
Seq A exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTTTACGTGGACAG
Seq C2 exon
CCATGCAGTTAGCCAAGTTGGACAGAACTTTACGTTTGTCCTTACAGACATTGACAGCAAACAGAGGTTTGGGTTCTGTCGCTTATCTTCTGGGGCCAAAAGCTGCTTCTGTATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'2-11,'2-9,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF156511=Tox-SGS=FE(17.9=100),PF0345613=uDENN=PU(23.0=93.3)
A:
PF156511=Tox-SGS=FE(20.5=100),PF0345613=uDENN=FE(26.2=100)
C2:
PF156511=Tox-SGS=PD(34.6=65.9),PF0345613=uDENN=PD(47.5=70.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGGACTACAGTGACCA
R:
TACAGAAGCAGCTTTTGGCCC
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]