BtaEX0011024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94874633-94911109:-
Coord C1 exon
chr11:94911066-94911109
Coord A exon
chr11:94886651-94886700
Coord C2 exon
chr11:94874633-94874752
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTCTCTCCACAGGAA
3' ss Score
14.04
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq A exon
GAAGTTCTACAGACTCTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAG
Seq C2 exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCAAAGAGTTGCTTCTGTATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'9-12,'9-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
PF0345613=uDENN=FE(26.2=100)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(4.9=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAATTCCCGGAG
R:
TTGCTCCTGAAGATAAGCGGC
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development