MmuEX0014218 @ mm10
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:38126529-38159850:-
Coord C1 exon
chr2:38159807-38159850
Coord A exon
chr2:38136926-38136975
Coord C2 exon
chr2:38126529-38126648
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTCTTTCCACAGGAA
3' ss Score
13.15
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGACCAG
Seq A exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAG
Seq C2 exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392_MULTIEX2-6/16=5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
PF0345613=uDENN=FE(26.2=100)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(13.6=22.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCAATTCCCAGAGGAC
R:
TTGGCTCCTGAAGATAAGCGG
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types