DreEX0003541 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8346200-8354814:+
Coord C1 exon
chr21:8346200-8346243
Coord A exon
chr21:8351376-8351425
Coord C2 exon
chr21:8354745-8354814
Length
50 bp
Sequences
Splice sites
3' ss Seq
AATTCTTTCTTTTTGTCTAGGAA
3' ss Score
9.58
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GACTAGAGGTGCGCAGAAGTTTCCCCGACACATACACTGAACAG
Seq A exon
GAAACGCTACAGACTATCCCAAAGTTTTGTTTCCCTTTTAATATGGACAG
Seq C2 exon
CTACTTGCCGTGGTTTGAGGTGTTTTACAAGCTGTTGAATATCCTGGCAGACTACACAACCAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-2/18=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(20.3=80.0)
A:
PF0345613=uDENN=FE(27.1=100)
C2:
PF0214116=DENN=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGTGCGCAGAAGTTTCC
R:
TCCTTTGGTTGTGTAGTCTGCC
Band lengths:
108-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]