GgaEX0001245 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9127087-9169614:-
Coord C1 exon
chr17:9169571-9169614
Coord A exon
chr17:9152830-9152879
Coord C2 exon
chr17:9127087-9127156
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCTTTCCACAGGAA
3' ss Score
13.89
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATCCTGAGGTGCGGAGGCAATTCCCAGAGGACTACAGTGACCAG
Seq A exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTTTACGTGGACAG
Seq C2 exon
TTACCTACCATGGTTTGAAGTCTTTTATAAGCTGCTCAATGTCTTGGCAGATTATTCAGCAAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-1/19=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0345613=uDENN=PU(34.8=94.1)
C2:
PF0214116=DENN=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGAGGTGCGGAGGC
R:
GTCCTTTTGCTGAATAATCTGCCA
Band lengths:
112-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]