RnoEX0027097 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22390099-22413288:-
Coord C1 exon
chr3:22413245-22413288
Coord A exon
chr3:22394124-22394175
Coord C2 exon
chr3:22390099-22390148
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCAGTGTTCCTTACTTCCAGGAG
3' ss Score
9.44
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq A exon
GAGACAGGATAAGGTCATCTGGCACATTTGTCCTTCAGAGGGCACTTGTGAG
Seq C2 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX1-3/6=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
NO
C2:
PF0345613=uDENN=FE(26.2=100)
Main Inclusion Isoform:
ENSRNOT00000091747fB4027
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAATTCCCGGAG
R:
CTGTCCACATAGAAGGGAAAACA
Band lengths:
84-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]