RnoALTA0030107-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2078072-2078473:+
Coord C1 exon
chr12:2078072-2078181
Coord A exon
chr12:2078306-2078317
Coord C2 exon
chr12:2078318-2078473
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ACAAGTCCTGCCTTACTCAGACC
3' ss Score
4.9
Exon sequences
Seq C1 exon
GCTTGCAAGGTGGCCCTCGTTCTGACTTTGACATGGCCTATGAACGTGGCCGGATATCTGTTTCCCTTCAAGAAGAGGCCTCTGGAGGCCCTCAGACAGCATCCCCTAGG
Seq A exon
ACCCCCACTCAG
Seq C2 exon
GAGCTCCGGGAGCAGCCAGCAGGCGCCTGTGAATATAGCTTCTGTGAGGATGAGTCAGCCACAGGTGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCGAAGAGAGAACTAGCCAAGCTGATGCGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977-17-16,17-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGACAGCATCCCCTAGG
R:
CCAAAGGGACATCCACCTGTG
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]