RnoALTA0035890-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196510361-196510775:-
Coord C1 exon
chr2:196510625-196510775
Coord A exon
NA
Coord C2 exon
chr2:196510361-196510516
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
CTTCTCAATCCCCTTAGAAGCTT
3' ss Score
1.5
Exon sequences
Seq C1 exon
GTGCTGTGAGGAGCAAAGGTCCTGTTGTTCAGTACACTCAGGATCTAACGAGTACTGGAATCCAGTTTAAGCCCATGGAGCCCCTGCAGCCTATAGTCCCACCTGCCCCGCTTCCCATGCTTCCTCTTTCCCCCCAGGCAGGCGACAGTGA
Seq A exon
NA
Seq C2 exon
CTTAGAAAGCCAGCTTGCTCAATCACGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGACCAGGATCTGTGAGTTCTGGCCATTCCTCCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCCTGGGAAAATTGGAATGAACCAGACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-26-16,26-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCTATAGTCCCACCT
R:
TTCCGTGATTGAGCAAGCTGG
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]