RnoALTD0023425-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023679 | Prdm5
Description
PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]
Coordinates
chr4:96732982-96734844:+
Coord C1 exon
chr4:96732982-96733156
Coord A exon
NA
Coord C2 exon
chr4:96734670-96734844
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GTGTTGTACATTGCACACAGGTC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAAGGAGAAAATATTTTCTACTTGGCAGTCGATGATATAGAAACAGATACAGAGCTTTTGATTGGCTACCTGGACAGTGATGTGGAGGCAGAGGAGGAGGAGCAGCAAGCTCTGACCATGGCCAGAGAAGGCAAAGTTGACCACTCTAAGGGACAGTTGGCAGCTGGAAGTAAAG
Seq A exon
NA
Seq C2 exon
GTCACCTTGGCTGTGAAGAGGACTTTGCCTGCCCACAGTGTGAATCGAGCTTTCCCAGTGAGGAAGTTCTTACTGAGCACCTTCAGAGCTTGCACCAGAAGCCCACAGGGGAGAAAGAGTTCAAATGCGAGAACTGCGGGAAGAAGTTCCCTGTGAGGCAGGCCTTGCAGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023679-7-6,8-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=49.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACCTGGACAGTGATGT
R:
CCGCAGTTCTCGCATTTGAAC
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]