BtaALTD0017114-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4604036-4606497:+
Coord C1 exon
chr6:4604036-4604171
Coord A exon
chr6:4604172-4604210
Coord C2 exon
chr6:4606323-4606497
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
GCTTGCTTGTAAATATGCAGATC
3' ss Score
5.23
Exon sequences
Seq C1 exon
GAAGGAGAAAACATTTTCTATTTGGCAATTGAAGATATAGAAACAGATACAGAGCTTCTGATTGGCTACCTGGACAGTGACATGGAGGCCGATGAAGAAGAACAGCAAATTATGACAATGATCAATGAAGAGGAAG
Seq A exon
GTAAAAATTCTAAAGGACAATCAACAGCTAGCAGAAAAG
Seq C2 exon
ATCGCTTTGGCTGTAAAGAGGACTATGCCTGTCCCTACTGTGAATCGAGTTTTACCAGTGAGGAAATTCTTGCCGAGCATCTTCAGACATTGCACCAGAAACCCACAGAGGAGAAAGAATATAAGTGCAAGAGCTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111-13-7,14-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(88.1=88.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTACCTGGACAGTGACA
R:
CGATTCACAGTAGGGACAGGC
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development