RnoEX0001352 @ rn6
Exon Skipping
Gene
ENSRNOG00000036743 | AABR07005632.1
Description
NA
Coordinates
chr1:190462327-190466249:+
Coord C1 exon
chr1:190462327-190462454
Coord A exon
chr1:190465782-190465896
Coord C2 exon
chr1:190466076-190466249
Length
115 bp
Sequences
Splice sites
3' ss Seq
CATCCCTCCCATTTTCACAGGAC
3' ss Score
9.98
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCCAAGTACCACCTCAAAGACAAGGATCTGAGAAAGATCCATAAGGCCGCGCGTGACGGAGATGCAGCTAGAGTGCAGCAGCTCCTGCTCGGGAAACACTGCGTGAATGACAAAGACAAGAAAAAAAG
Seq A exon
GACGGCCCTCCACATCGCCTGTGCTTACGGCCACCCAAAGGTGGTGATGGCCCTGGTAGAGGGGAAGTGTGAGGTCAATGCCACAGACAGTGAGGAGTGCACAAGTCTAGTGAAG
Seq C2 exon
GCTGTGCAATGTCAGGAAGAGGAATGTGCTACCATTCTGCTGGAGAACAATGCCGACCCGAACATCGTGGATGCCCAGGGCAACAGCGCTCTCCACTATGCTGTCTATTATAAGAATACATCCCTGGCTGCAAAACTGCTTGACCATGAAGTGAACATCGAAGCGACAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036743_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(32.3=69.8)
A:
PF127962=Ank_2=FE(40.9=100)
C2:
PF127962=Ank_2=PD(24.7=39.7),PF127962=Ank_2=PU(29.0=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGAGATGCAGCTAGAGT
R:
TGTCGCTTCGATGTTCACTTCA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]