RnoEX0004137 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10388384-10390327:-
Coord C1 exon
chr3:10390205-10390327
Coord A exon
chr3:10389633-10389673
Coord C2 exon
chr3:10388384-10388512
Length
41 bp
Sequences
Splice sites
3' ss Seq
AACTGCCTCCCTTCCTGTAGGCC
3' ss Score
9.94
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
ACAAGGACGAATGCTCAGGGGGTCCCAGTCCCTGCTCCCATACCTGCCGTAATGCTCCCGGCCGTTTCTCCTGCTCCTGCCCCACTGGCTTCTCCCTGGCTTGGGACCGCAGGAACTGTAGAG
Seq A exon
GCCTGGCTTCCGGGTAACTGCTGACGGAAGCAACTGCGAAG
Seq C2 exon
ATGTGGACGAATGCCTGGAACAGCTGGATGAGTGCCACTACAATCAAGTCTGTGAGAACACTCCAGGTGGCTACCACTGTGGTTGTCCCAGAAGGTACCGCCAACAAGGTCACGGCCTGCCTTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'37-48,'37-47,38-48
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCATACCTGCCGTAATG
R:
TGTAGTGGCACTCATCCAGCT
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]