BtaEX0017235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100770775-100773241:+
Coord C1 exon
chr11:100770775-100770897
Coord A exon
chr11:100771550-100771684
Coord C2 exon
chr11:100773113-100773241
Length
135 bp
Sequences
Splice sites
3' ss Seq
CATGCGCCCCCCGCCCCCAGATG
3' ss Score
11.45
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
ACAGGGACGAGTGCTCCGACAGCCCCCGGCCCTGCTCCCACTCCTGCCACAATGCACCTGGCCGCTTCTCCTGCTCCTGCCCGGTTGGCTTCGCCCTGGCCAGGGACGAAAGGACCTGCAGAG
Seq A exon
ATGTGGACGAGTGTGCGTGGGAGGCCGACCTCTGCCAAGAGGATCAGCGCTGCGTGAACCTGCTGGGGTCCTACCACTGCCTGCCCGACTGCAGGCCTGGCTTCCGGGTGGCCGCCGATGGAGCCAGTTGTGAAG
Seq C2 exon
ATGTGGACGAGTGTCTGGAGCAGACAGATGAGTGTCACTACAACCAGACTTGTGAGAACATCCCAGGCGGGCACCGCTGCGGCTGCCCCAGGGGCTACCAGGTCCAGGACCCCGGCCTGCCCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'98-106,'98-105,99-106
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGACGAGTGCTCCGA
R:
GTCCTGGACCTGGTAGCCC
Band lengths:
232-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development