GgaEX6026977 @ galGal4
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr26:4083757-4085436:-
Coord C1 exon
chr26:4085314-4085436
Coord A exon
chr26:4084459-4084575
Coord C2 exon
chr26:4083757-4083879
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCGCTTTTTCACCCCCCCAGATA
3' ss Score
9.68
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACATCGACGAGTGCCGGCTCAACAACGGCGGCTGCGACCACATCTGCAGGAACACGGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAACTGCTCATCAACGAGAGGAACTGCCAAG
Seq A exon
ATATCGACGAGTGCTCCTTTGACCGGACCTGCGACCACCTCTGCATCAACACCCCTGGCAGTTTCCAGTGCCTCTGCAACAAGGGCTACACGCTCTATGGGCTCACCCACTGTGGAG
Seq C2 exon
ATGTTGATGAATGCAGCATTAACCGCGGAGGCTGCAAATTTGGCTGCATCAACACACCTGGCAGCTACCAGTGTACCTGTCCTGCCGGCTGCAAGCTGCACTGGAACAAAAAGGACTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGACGAGTGCCGGC
R:
GCAGTCCTTTTTGTTCCAGTGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]