DreEX0064624 @ danRer10
Exon Skipping
Gene
ENSDARG00000063097 | scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
Coordinates
chr4:8920144-8923036:-
Coord C1 exon
chr4:8922914-8923036
Coord A exon
chr4:8920856-8920972
Coord C2 exon
chr4:8920144-8920266
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTTGTCCTCTGCAGATA
3' ss Score
11.3
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATATTGACGAATGTTTGGAGAATAATGGGGGTTGCGATCATTTCTGTCGTAATACTGTGGGCAGTTTTGAGTGCAGCTGTCAGAAAGGACACAAACTTCTGACCAATGAGCGCACCTGTCAAG
Seq A exon
ATATTGACGAGTGCTCCTTTGAGAGGACGTGTGATCACGTCTGCATCAACTACCCTGGTAGCTTTGAGTGTGTTTGCCACAAAGGCTACAGTCTCTATGGCTTCACACACTGCGGCG
Seq C2 exon
ATATTGACGAGTGCAGCATCAATAACGGAAGCTGTGAACACGGCTGTGTGAACACACCGGGCAGTTACGAGTGTGTGTGTCCTCCTGGACAAAAGCTCCACTGGAACAAGAAAGACTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063097-'9-12,'9-10,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAATGTTTGGAGAATAATGGG
R:
CAACACAGTCTTTCTTGTTCCAGTG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]