HsaEX6027169 @ hg19
Exon Skipping
Gene
ENSG00000159307 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:13441]
Coordinates
chr22:43623380-43627881:-
Coord C1 exon
chr22:43627759-43627881
Coord A exon
chr22:43625078-43625194
Coord C2 exon
chr22:43623380-43623502
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTGTGGCCACGCAGACA
3' ss Score
7.13
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
ACATCAACGAGTGCCTGGTCAACAACGGAGGCTGCGACCACTTCTGCCGCAACACCGTGGGCAGCTTCGAGTGCGGCTGCCGGAAGGGCTACAAGCTGCTCACCGACGAGCGCACCTGCCAGG
Seq A exon
ACATCGACGAGTGCTCCTTCGAGCGGACCTGTGACCACATCTGCATCAACTCCCCGGGCAGCTTCCAGTGCCTGTGTCACCGCGGCTACATCCTCTACGGGACAACCCACTGCGGAG
Seq C2 exon
ATGTGGACGAGTGCAGCATGAGCAACGGGAGCTGTGACCAGGGCTGCGTCAACACCAAGGGCAGCTACGAGTGCGTCTGTCCCCCGGGGAGGCGGCTCCACTGGAACGGGAAGGATTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159307-'17-15,'17-14,20-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACGAGTGCCTGGTCAA
R:
CGCAATCCTTCCCGTTCCAG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)