MmuEX0041331 @ mm9
Exon Skipping
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83451842-83465223:-
Coord C1 exon
chr15:83465101-83465223
Coord A exon
chr15:83459814-83459930
Coord C2 exon
chr15:83451842-83451961
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCCCTGTGACCACAGACA
3' ss Score
7.48
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
ACATCAACGAGTGCTTGATGAATAACGGAGGCTGCGACCACTTCTGCCGAAACACCGTGGGCAGCTTTGAATGCGGCTGCCAAAAGGGCCACAAGCTACTGACGGACGAGCGGACATGCCAAG
Seq A exon
ACATTGACGAGTGTTCCTTTGAGCGGACCTGTGACCACATCTGCATCAACTCCCCCGGCAGTTTCCAGTGCCTGTGCCGCCGAGGCTACACACTCTACGGGACAACCCACTGCGGAG
Seq C2 exon
AGATGAACGGGTGCCTGTCTCGGTCCAAGGCCTCTGCCCAGGCCCAGCTGTCCTGTGGCAAGGTGGGTGGAGTGGAAAACTGCTTCCTGTCCTGCCTGGGCCACAGTCTCTTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763_MULTIEX1-8/9=7-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACGAGTGCTTGATGA
R:
CTGGCATGAAGAGACTGTGGC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: