MmuEX6076355 @ mm9
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28299261-28300802:+
Coord C1 exon
chr17:28299261-28299383
Coord A exon
chr17:28299899-28300015
Coord C2 exon
chr17:28300677-28300802
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCGAATCCTTGCTGTTCCAGATA
3' ss Score
8.4
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATATAGACGAGTGCCGCTTAAACAACGGGGGCTGTGACCACATCTGCCGCAACACAGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAGCTTCTCATCAACGAAAGGAGCTGCCAGG
Seq A exon
ATATAGATGAGTGCTCCTTCGACCGAACCTGTGACCACATGTGTGTCAACACCCCGGGGAGCTTCCAGTGTCTCTGTCATCGTGGCTACCTTCTATATGGTGTCACTCACTGCGGGG
Seq C2 exon
ATGTGGACGAATGTAGCATCAATAAGGGAGGCTGCCGCTTTGGCTGCATCAACACCCCAGGCAGCTATCAGTGTACCTGCCCAGCAGGCCAGGGCCGCCTTCACTGGAACGGGAAGGATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677-'8-14,'8-12,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(89.4=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGAGTGCCGCTTAAACAA
R:
GTGCAATCCTTCCCGTTCCAG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: