RnoEX0078746 @ rn6
Exon Skipping
Gene
ENSRNOG00000000500 | Scube3
Description
signal peptide, CUB domain and EGF like domain containing 3 [Source:RGD Symbol;Acc:1304880]
Coordinates
chr20:7737089-7738716:+
Coord C1 exon
chr20:7737089-7737211
Coord A exon
chr20:7737784-7737900
Coord C2 exon
chr20:7738591-7738716
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAGACTCCTTGCTGTTCCAGATA
3' ss Score
8.06
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACATAGACGAGTGCCGCTTACACAACGGGGGCTGTGACCACATCTGCCGCAACACAGTGGGCAGCTTTGAATGCAGCTGTAAGAAGGGCTACAAGCTTCTCATCAACGAGAGGAGCTGCCAGG
Seq A exon
ATATAGATGAGTGTTCCTTTGATCGAACCTGTGACCACATGTGTGTCAACACTCCGGGAAGCTTCCAGTGTCTCTGTCATCGAGGCTACCTTCTGTATGGCATCTCTCATTGTGGGG
Seq C2 exon
ATGTGGATGAATGCAGCATCAATAAGGGGGGCTGCCGCTTTGGCTGCATCAACACCCCAGGCAGCTATCAGTGTACCTGCCCGGCAGGCCAGGGCCGCCTCCACTGGAACGGAAAGGATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000500-'11-14,'11-11,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACGAGTGCCGCTTACACA
R:
TGTGCAATCCTTTCCGTTCCA
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]