RnoEX0004765 @ rn6
Exon Skipping
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:189987238-190000455:+
Coord C1 exon
chr1:189987238-189987411
Coord A exon
chr1:189995209-189995390
Coord C2 exon
chr1:190000324-190000455
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCATTTTGTTTCAGGGC
3' ss Score
12.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTCTCTGGCCACTTCTATTGCAGGGTTCCTTCATTTTCTCACCTTCTTTCCATATTTGATCGTATTTAGTCTGTATGATCAGACAAGCCTCAGTGGGAAGCTGGCTCTCTGTCTCATTACCAACACCGCACTAGCATTTGGGACTGACTTGATATGCAAGCTGGAAATGAAGG
Seq A exon
GGCATGGTGCTCAGTGGTACAACTTTGCTACAAAAGTAAACCCTGACGATGACTTAACCTTGGCCCACATAATAGGAATGTTTTTATTTAGTGCTTTTCTGTACGGCCTTGTGGCCTGGTATGTAGACGCTGTCTTTCCAGGGAAGTATGGTGTGCCCAAGCCCTGGAACTTTTTCCTGCAG
Seq C2 exon
AAAACCTACTGGTTTGGAGAGCCAGCCTTAAGCAGGGAAGAGAGCCAAGTCAGTGATTTACCTCCAAGTGATTTTATGGAGCCCGAACCTGTTGACTTAGAGGCTGGCATCCAGATTCAGCATCTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296-'17-17,'17-16,19-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.3=100)
A:
PF126982=ABC2_membrane_3=PD(22.3=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACTTCTATTGCAGGG
R:
GGTTCGGGCTCCATAAAATCACT
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]