MmuEX6013710 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120224345-120232989:+
Coord C1 exon
chr7:120224345-120224518
Coord A exon
chr7:120227400-120227581
Coord C2 exon
chr7:120232858-120232989
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCCCTTTTGTTTCAGGGC
3' ss Score
11.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTCTCTGGCCACTTCCATTGCAGGGTTCCTCCACTTCCTCACCTTCTTTCCATATTTGATACTATATCATAAGTATGACCAGATAAGCCTCAGTGGGAAGCTGGCTCTCTGTCTCATTACCAACACGGCGCTAGCATTTGGGACTGACTTGATATGTAAGCTGGAAATGAAGG
Seq A exon
GGCACGGCGCTCAGTGGAACAACTTTGCTACAAAAGTAAACGCCGATGATGACTTAACCTTGGCCCACATAATAGGAATGTTTTTATTTAGTGCTTTTCTGTATGGCCTTGTGGCCTGGTACTTAGACGCTGTCTTTCCAGGGACGTATGGTGTGCCCAAGCCCTGGAACTTTTTCCTGCAG
Seq C2 exon
AAAGCCTACTGGTTTGGAGAGCCAGCCTTAAGCAGGGAAGAGAGCCAAGTCTCTGATTTACTTTCCAGTGATTTTATGGAGCCTGAACCTGTTGGCTTAGTGGCTGGCATCCGGATTCAGCATTTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'7-20,'7-11,17-20=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.2=100)
A:
PF126982=ABC2_membrane_3=PD(9.1=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTCCACTTCCTCACCT
R:
CAGCCACTAAGCCAACAGGTT
Band lengths:
256-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types