DreEX6015428 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12495046-12500857:+
Coord C1 exon
chr3:12495046-12495219
Coord A exon
chr3:12495692-12495873
Coord C2 exon
chr3:12500711-12500857
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTTTGTTGTCCTCAGGCA
3' ss Score
10.77
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
CGAATGTGGCTGCAGCAGCCGGCGGCTTCATCTATTTTCTGAGTTACCTGCCGTACGTCTTCCTGTGGCCTCGCTACGACCTGCTGTCACACGCTCAGAAAGTGTCCGCCTGTCTCATCTCTAACGTGGCCATGGCCATGGGTGCGCAGCTCATCGGCATGTTCGAGGGCAAAG
Seq A exon
GCACGGGCATTCAGTGGCACAACCTGTTTGAAGCGGTGACGGTGGATGATGACTTCTCTCTGGCGCAGGTCATAGGTCTGCTGCTGCTAGATGCTCTTTTGTACGGCCTCGTGGCCTGGTATGTCGAAGCCGTGTTTCCAGGAGAGTATGGAGTCCCTCAACCCTGGTACTTCTTTATTCTG
Seq C2 exon
CCCTCGTACTGGTGCAGCAGTCCCCGTGTGGCCTTTCTGAAGGAAAAGGAGGATGAAGAGGATGCAGAGAAAGCCTCAAAGGGTGAATTTATGGAAGAGGAGCCAGCTGGACTAGTCGCGGGGGTCAAGATCAAGCGTTTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'9-11,'9-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.117
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
PF126982=ABC2_membrane_3=PD(9.0=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGCCGTACGTCTTCCT
R:
CTAGTCCAGCTGGCTCCTCTT
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]