RnoEX6046401 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13750275-13756088:+
Coord C1 exon
chr10:13750275-13750448
Coord A exon
chr10:13753974-13754155
Coord C2 exon
chr10:13755945-13756088
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTCCCAATACATCCTCTAGGCA
3' ss Score
6.51
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCAACATGGCAGCAACCGTGGGCGGCTTCCTTTACTTCTTCACCTACACCCCTTACTTTTTCGTGGCTCCTCGGTACAACTGGATGACACTGAGTCAGAAGCTCTTGTCCTGCCTCCTATCTAATGTTGCCATGGCGATGGGAGCCCAGCTCATCGGAAAATTTGAAGCCAAAG
Seq A exon
GCACTGGCATCCAGTGGTGTGACCTCCTGAACCCTGTCAACGTAGATGATGATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCTGGATTCAGTACTCTATGGCCTGGTGACCTGGTACGTGGAGGCCGTCTTCCCAGGCCAGTTTGGCGTGCCCCAGCCCTGGTACTTCTTCCTTATG
Seq C2 exon
CCCTCCTACTGGTGTGGGAACCCAAGAACGGTCGTAGGGAAGGAAGAGGAAGGCGGCGACCCAGAAAAGGCTTTCAGAACCGAGTACTTTGAAGCTGAGCCGGAGGACTTGGCAGCTGGGATCAAGATCAAGCACCTGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'14-14,'14-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.9=100)
A:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCGTGGCTCCTCGGTAC
R:
CTTGATCCCAGCTGCCAAGTC
Band lengths:
244-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]