BtaEX6108002 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1813867-1818251:-
Coord C1 exon
chr25:1818078-1818251
Coord A exon
chr25:1815878-1816059
Coord C2 exon
chr25:1813867-1814010
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGGCATGTCTTCCAGGCA
3' ss Score
9.02
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCAACATGGCAGCAGCCATTGGCGGCTTCCTCTACTTCTTCTCCTACATCCCCTACTTCTTCGTTGCTCCTCGGTACAACTGGATGACGCTGAGCCAGAAGCTCTTCTCCTGCCTCCTGTCCAATGTCGCCATGGCGATGGGAGCCCAGCTCATAGGGAAATTTGAAGCTAAAG
Seq A exon
GCACAGGCATCCAGTGGCGAGACCTCCTGAGTCCCGTCAATGTGGACGACGACTTCACCTTCGGGCAGGTGCTGGGCATGCTGCTGCTGGACTCCGTCCTCTACGGGCTTGTGGCCTGGTATGTGGAGGCCGTCCTCCCGGGCCAGTTCGGCGTGCCCCAGCCCTGGTACTTCTTCATCCTG
Seq C2 exon
CCCTCGTACTGGTGCGGACGCCCAAGGACGGCGCTCGGGAAGGAGGAGGAGGACGACGACCCTGAGAAGGTGCTCAGGACCGAGTACTTTGAAGCTGAGCCTGAGGACCTGGTGGCCGGGATCAAGATCAAGCACGTGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'10-14,'10-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.271
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.0=100)
A:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTCCTCGGTACAACTGG
R:
CTTGATCTTGATCCCGGCCAC
Band lengths:
244-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]